Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01303 ATGACGACGCGGTTCAAGAAGAACAGGAAGAAGAGGGGTCACGTGAGCGCCGGTCACGGGCGCATCGGGAAGCACCGGAAGCATCCCGGAGGGCGAGGTAACGCCGGTGGCATGCACCATCACCGGATCCTCTTCGACAAGTACCATCCAGGTTACTTCGGGAAGGTCGGAATGCGGTACTTCCACAAGCTCCGCAACAAGTTCCACTGCCCCATCCTTAACATCGACAAGCTATGGTCCCTTGTCCCTCAGCAAGTTAAGGACCAAGCCTCCAAGGAAAACAAAGCGCCTCTCATCGACGTCACGCAGTTCGGCTACTTCAAGCTTTTGGGGAAGGGCGTTCTGCCGGAGAACCAACCCCTTGTCGTCAAGGCCAAGCTCGTCTCCAAGATCGCCGAGAAGAAAATCAAGGAGGCTGGAGGCGCTGTTGTTCTCACCGCTTGA 444 0.5676 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFHCPILNIDKLWSLVPQQVKDQASKENKAPLIDVTQFGYFKLLGKGVLPENQPLVVKAKLVSKIAEKKIKEAGGAVVLTA 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01303 147 SUPERFAMILY Ribosomal proteins L15p and L18e 6 146 IPR036227 -
Vimu10g01303 147 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 144 IPR021131 -
Vimu10g01303 147 ProSitePatterns Ribosomal protein L15 signature. 108 140 IPR001196 GO:0003735|GO:0005840|GO:0006412
Vimu10g01303 147 Gene3D - 58 147 - -
Vimu10g01303 147 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 147 - -
Vimu10g01303 147 FunFam 60S ribosomal protein L27a 58 147 - -
Vimu10g01303 147 Hamap 50S ribosomal protein L15 [rplO]. 1 146 IPR030878 GO:0003735|GO:0006412|GO:0015934
Vimu10g01303 147 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01303 Vimu-Chr10 13572651 13574981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01303 1 147 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 86.395 1.59e-91 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01303 K02900 - gmx:100802235 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03643 7 31515908 31516354 Vimu10g01303 10 13572651 13574981 ECH
Vimu10g01303 10 13572651 13574981 Vimu10g01303 10 13572651 13574981 ECH
Vimu7g03643 7 31515908 31516354 Vimu10g01303 10 13572651 13574981 PCT