Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01300 ATGGGTCGCCATTCCTGTTGTTTAAAGCAAAAACTAAGGAAAGGTTTATGGTCCCCCGAAGAAGATGAGAAGCTCTTCAATTACATAACCAGGTTTGGCGTTGGCTGCTGGAGTTCGGTTCCTAAACAAGCTGGACTGCAAAGGTGTGGAAAGAGCTGCAGATTGAGATGGATAAACTACTTGAGGCCGGATTTGAAGAGAGGGATGTTCTCTCAACAAGAGGAGGATCTTATAATTAGCCTTCATGAAGTTCTAGGAAATAGGTGGGCTCAAATTGCAGCTCAGTTACCAGGGAGAACTGATAATGAGATTAAGAACTTTTGGAATTCTTGTTTGAAGAAGAAGCTAATGAAGCAAGGGATTGACCCTGCTACACACAAGCCTCTTGTCAGTGCTGAAGATCACATAATAAAGGAAGAGAAGGACAGCATAGAGACACCGTCTGTGTTGTTACCAGTGTCTCAAGGGATTTTAGTCTCCTCACAGGATTCACCGCTTCTAGTGAACAATTCAAGTTACTATGATGGTGTGTTCAATGTAACAGAAACTTCAAGGGATGTTTCATTGGACCCTTTGTCCTCCTACTTTGAATTCCAAATGGGTTACAATTCAAGTGTGAACCCAATGAGGCAGTTTGATCAGAAGCAGGTGGGAACCAATTCAAGTTATGGATTCTCCTCATTGCCGTGTCTGAATAGCTCTGATCATCACGGGAACGTGTCGGTGGCAGAGTTTTCAGACAACAACTCAGCTTCTAAAATCAGTTCTTTGTTGAAGGAAAGTTCCAGCAATAGCTCTAGCATGAGTGTTTATCCAGGGGCCGGGTGTCAAATGATGGAAAATGCCGCCTTCTCATCATGGGAATGTGACAACAAAATTGATCCTTTGTTACAGTTTCAAGTCAATGTGGTAAAATCTCAAGAGTTCAAGACAGCTCTCTTCGGGTTTCAGACAGGTTACAGAAATTATAACAGAGAACGTGACAGTATATTTTATGTTGCAGATCAATTTGGTGATTCGCTGGATCTTTTCGGGGTGCTAGCTATACGGATTTGCCACTGGTAA 1065 0.4254 MGRHSCCLKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPATHKPLVSAEDHIIKEEKDSIETPSVLLPVSQGILVSSQDSPLLVNNSSYYDGVFNVTETSRDVSLDPLSSYFEFQMGYNSSVNPMRQFDQKQVGTNSSYGFSSLPCLNSSDHHGNVSVAEFSDNNSASKISSLLKESSSNSSSMSVYPGAGCQMMENAAFSSWECDNKIDPLLQFQVNVVKSQEFKTALFGFQTGYRNYNRERDSIFYVADQFGDSLDLFGVLAIRICHW 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01300 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vimu10g01300 354 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu10g01300 354 CDD SANT 70 109 IPR001005 -
Vimu10g01300 354 FunFam Myb transcription factor 11 67 - -
Vimu10g01300 354 Gene3D - 69 142 - -
Vimu10g01300 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vimu10g01300 354 CDD SANT 17 61 IPR001005 -
Vimu10g01300 354 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu10g01300 354 FunFam Transcription factor MYB86 69 139 - -
Vimu10g01300 354 SMART sant 66 114 IPR001005 -
Vimu10g01300 354 SMART sant 13 63 IPR001005 -
Vimu10g01300 354 PANTHER MYB DOMAIN PROTEIN 55 1 276 - -
Vimu10g01300 354 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vimu10g01300 354 Gene3D - 11 67 - -
Vimu10g01300 354 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vimu10g01300 354 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01300 Vimu-Chr10 13507198 13510039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01300 1 133 MYB Transcription Factor Family AT4G01680 84.211 2.06e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu10g01300 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01300 K09422 - gmx:100801702 486.108