Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01296 ATGGCATCGTCGAGCTCCTACAATTCTCCTTGTGCTGCCTGCAAGTTCTTGAGGAGGAAATGCCTTTCAGGGTGCATCTTTGCACCATACTTCCCACCGGAAGAGCCTCAGAAGTTCGCAAACGTGCACAAGATATTCGGTGCCAGCAATGTGACGAAGCTTCTGAACGAGCTTCTTCCTCACCAGAGGGAAGATGCAGTGAACTCCCTTGCCTATGAAGCTGAGGCACGTGTGAGAGACCCAGTTTATGGATGCGTAGGAGCCATCTCTTTTCTGCAGAGACAAGTTCAAAGGCTCCAAAAGGAGCTTGATTCTGCCAATGCTGATCTCCTTCGCTATGCCTACAATGACATGCCTTCACCCTCTCTTTCTGTGCCACCAGCAATGACAGCAACAACAATTCAACAAATGCCCCAAAGGTCTTTCAATGCAAGGTTTGGAAATGAAGCAAGTGGGTTTTATAGGCCCTCTCCCACCATCACTTACAACTCTTACCCTTATTCTCTTCCATGGACTGATACCCCTCCTCAAGATATCAATGATGGAGGAGGAGAAGGAGGAGGTAATAACTTGTGA 576 0.4809 MASSSSYNSPCAACKFLRRKCLSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRYAYNDMPSPSLSVPPAMTATTIQQMPQRSFNARFGNEASGFYRPSPTITYNSYPYSLPWTDTPPQDINDGGGEGGGNNL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01296 191 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Vimu10g01296 191 MobiDBLite consensus disorder prediction 171 191 - -
Vimu10g01296 191 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Vimu10g01296 191 Coils Coil 89 116 - -
Vimu10g01296 191 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01296 Vimu-Chr10 13320097 13322823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01296 1 189 AS2 family AT5G63090 63.636 1.27e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu10g01296 LOB 9.8e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01296 - - gmx:100800614 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00628 7 6299272 6299832 Vimu10g01296 10 13320097 13322823 ECH
Vimu10g01296 10 13320097 13322823 Vimu10g01296 10 13320097 13322823 ECH
Vimu7g00628 7 6299272 6299832 Vimu10g01296 10 13320097 13322823 PCT