Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01287 ATGGCGGATCCAACCTCATCTAACCCTGATGATAAGGGTCATCCCTCTTTGGACTCGAAAAGTGAGAAGAAGGATTATTCCACAGCAATATTAGAACGCAAGAAGTCTCCTAACCGACTTATTGTCGATGAAGCAGTTAATGATGATAATTCTGTGGTTACATTGCACCCTGAAACAATGGAGAAGCTTCAGTTATTCCGGGGAGACACTGTTCTGATAAAGGGAAAGAAGCGAAGGGATACGGTTTGTATTGTCCTGGTTGATGAACATTGTGATGAACCAAAAATTAGGATGAATAAGGTTGTTCGGGCTAACCTCAGAGTGAGACTTGGAGATGTTGTCTCTGTCAATCAATGTCCTGATGTGAAGTACGGAAAACGAGTTCATATCCTTCCAATTGATGACACCATTGAGGGTGTAACTGGCAATTTGTTTGATGCATATCTGAAGCCATACTTTCTGGAGTCGTACAGGCCTGTGAGAAAAGGGGACTTGTTCCTTGTTAGGGGTGGAATGCGTAGTGTTGAATTCAAGGTAATAGAGACTGATCCTAGTGAATACTGTGTTGTGGCACCTGATACTGAGATATTCTGTGAGGGAGAGCCAATCAAAAGGGAAGATGAAGAGAGACTAAATGAAGTTGGTTATGATGATGTTGGTGGTGTTAGGAAACAAATGGCTCAGATTCGTGAGCTTGTAGAACTTCCACTAAGACATCCACAGCTCTTCAAATCAATTGGTGTTAAGCCACCAAAAGGAATCTTGCTTTATGGACCACCTGGTTCTGGGAAGACTTTGATTGCAAGAGCAGTGGCTAATGAGACTGGTGCGTTCTTCTTTTTGATCAATGGACCAGAAATAATGTCAAAGCTGGCTGGTGAGAGTGAAAGCAATCTGAGGAAGGCATTTGAAGAAGCTGAAAAGAATTCCCCTTCTATCATTTTCATTGATGAACTAGACTCGATTGCTCCTAAGAGAGAAAAGACACATGGTGAAGTGGAGAGGCGTATAGTTTCACAACTTTTGACTCTTATGGATGGCCTCAAAACCCGATCACATGTGATAGTTATTGGAGCCACAAATAGACCCAATAGTATTGATCCTGCTCTCAGAAGATTTGGAAGGTTTGATAGGGAGATTGACATTGGTGTACCAGATGAAGTTGGAAGGTTGGAGGTTCTTAGAATTCATACAAAGAACATGAAACTTTCAGACAATGTTGATCTTGAAAAAGTTGCCAGAGACACTCATGGTTATGTTGGAGCAGATCTTGCTGCTCTTTGCACGGAGGCTGCACTACAGTGTATCCGGGAGAAAATGGATGTCATTGACTTAGAGGATGAAACAATTGATGCGGAGGTTTTGAACTCCATGGCTGTGACTAATGAACACTTCCAAACTGCTTTAACTTCTTCCAACCCATCTGCTCTGCGTGAAACAGTAGTGGAGGTTCCAAATGTTTCCTGGGATGACATTGGAGGCTTGGAGAATGTCAAAAGGGAGCTTCAGGAGACTGTTCAATACCCAGTGGAACATCCTGAGAAGTTTGAGAAATTTGGCATGTCACCTTCTAAAGGTGTTCTCTTTTATGGACCTCCTGGCTGTGGTAAAACCCTGCTTGCAAAAGCCATTGCTAATGAGTGCCAGGCCAACTTTATAAGTGTCAAGGGACCTGAGTTACTGACAATGTGGTTTGGTGAAAGTGAGGCAAATGTTCGTGAGATATTTGACAAGGCCAGACAGTCAGCTCCTTGTGTGCTTTTCTTTGATGAACTTGACTCCATTGCAACCCAGCGAGGCAGTTCTGTGGGACATGCTGGTGGTGCTGCAGATAGGGTGTTGAACCAACTGTTAACTGAAATGGATGGCATGACAGCGAAGAAAACAGTTTTCACCATTGGGGCAACAAACAGACCAGACATCATAGACCCTGCATTGCTCAGACCAGGACGTCTTGACCAATTGATTTACATCCCTTTACCGGACCAAAGTTCACGTCTTCAAATCTTCAAAGCATGCCTCAGGAAGTCACCAATCTCAAAGGATGTTGATCTTGAAGCTCTTGCCAGTTATACTCATGGATTCAGTGGTGCAGACATAACAGAAATTTGCCAACGCGCATGCAAATATGCCATCAGGGAAGACATTGAAAAGGGTATTGAGCAGGAGAGAAGAAAAAGAGAAAACCCTGAAGCCATGGAAGAAGATGACATTGTTGAGATCTCTGAGATAAAGCCTGCACACTTTGAGGAGTCTATGAAGTTTGCTCGGCGGAGTGTGAGTGATGCTGACATCAGAAAATACCAACTTTTTGCTCAGACCTTGCAACAGTCGCGAGGATTTGGATCTGAGTTTCGGTTTCCAGAACGAAACGAGAACACTTCAACAGGTGCCTCAGACCCTTTCTCATCTGCTGCAGCAGAGGGAGATGATGATTTGTATGGTTAG 2448 0.4355 MADPTSSNPDDKGHPSLDSKSEKKDYSTAILERKKSPNRLIVDEAVNDDNSVVTLHPETMEKLQLFRGDTVLIKGKKRRDTVCIVLVDEHCDEPKIRMNKVVRANLRVRLGDVVSVNQCPDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFLESYRPVRKGDLFLVRGGMRSVEFKVIETDPSEYCVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRSHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDNVDLEKVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALTSSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGHAGGAADRVLNQLLTEMDGMTAKKTVFTIGATNRPDIIDPALLRPGRLDQLIYIPLPDQSSRLQIFKACLRKSPISKDVDLEALASYTHGFSGADITEICQRACKYAIREDIEKGIEQERRKRENPEAMEEDDIVEISEIKPAHFEESMKFARRSVSDADIRKYQLFAQTLQQSRGFGSEFRFPERNENTSTGASDPFSSAAAEGDDDLYG 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01287 815 NCBIfam CDC48 family AAA ATPase 40 776 IPR005938 GO:0016787
Vimu10g01287 815 Pfam AAA+ lid domain 406 448 IPR041569 -
Vimu10g01287 815 Pfam AAA+ lid domain 682 723 IPR041569 -
Vimu10g01287 815 SUPERFAMILY Cdc48 domain 2-like 121 213 IPR029067 -
Vimu10g01287 815 Gene3D - 664 772 - -
Vimu10g01287 815 PANTHER AAA-FAMILY ATPASE 416 778 - -
Vimu10g01287 815 Pfam Cell division protein 48 (CDC48), N-terminal domain 39 120 IPR003338 -
Vimu10g01287 815 Gene3D - 17 121 - -
Vimu10g01287 815 Gene3D - 385 476 - -
Vimu10g01287 815 FunFam Transitional endoplasmic reticulum ATPase 17 121 - -
Vimu10g01287 815 Pfam ATPase family associated with various cellular activities (AAA) 254 383 IPR003959 GO:0005524|GO:0016887
Vimu10g01287 815 Pfam ATPase family associated with various cellular activities (AAA) 527 660 IPR003959 GO:0005524|GO:0016887
Vimu10g01287 815 ProSitePatterns AAA-protein family signature. 630 648 IPR003960 GO:0005524|GO:0016887
Vimu10g01287 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 475 IPR027417 -
Vimu10g01287 815 FunFam Cell division control 48 122 218 - -
Vimu10g01287 815 SUPERFAMILY ADC-like 35 119 IPR009010 -
Vimu10g01287 815 CDD RecA-like_CDC48_r1-like 218 383 - -
Vimu10g01287 815 ProSitePatterns AAA-protein family signature. 354 372 IPR003960 GO:0005524|GO:0016887
Vimu10g01287 815 Gene3D - 477 660 IPR027417 -
Vimu10g01287 815 MobiDBLite consensus disorder prediction 788 802 - -
Vimu10g01287 815 FunFam Cell division control 48 385 476 - -
Vimu10g01287 815 SMART CDC48_2_2 139 205 IPR004201 -
Vimu10g01287 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 773 IPR027417 -
Vimu10g01287 815 SMART AAA_5 250 386 IPR003593 GO:0016887
Vimu10g01287 815 SMART AAA_5 523 662 IPR003593 GO:0016887
Vimu10g01287 815 Pfam Cell division protein 48 (CDC48), domain 2 141 204 IPR004201 -
Vimu10g01287 815 FunFam Transitional endoplasmic reticulum ATPase 477 660 - -
Vimu10g01287 815 CDD RecA-like_CDC48_r2-like 498 658 - -
Vimu10g01287 815 Gene3D - 219 383 IPR027417 -
Vimu10g01287 815 MobiDBLite consensus disorder prediction 781 815 - -
Vimu10g01287 815 Gene3D - 122 218 - -
Vimu10g01287 815 SMART CDC48_N_2 39 122 IPR003338 -
Vimu10g01287 815 MobiDBLite consensus disorder prediction 13 30 - -
Vimu10g01287 815 FunFam Transitional endoplasmic reticulum ATPase 215 383 - -
Vimu10g01287 815 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01287 Vimu-Chr10 13155209 13160363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01287 519 718 Calmodulin-binding Proteins AT3G56690 42.365 8.37e-41 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01287 K13525 - gmx:100798680 1548.1