Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01284 TTGGTGATTCTCCTGGAACCAAAGCAAAAACAGATTTTGAAGCGTGAGAGAGTTATGGGTATCATTATAAAGGGAGAAATAGAGAGGGTAAATGGGAAGGAACTGAGTTACATTGAATTTGTTGATAGATATATGGAGAAGAACAAACCCGTGGTACTCACTGGCCTAATGGACCATTGGAGAGCTCACACTGATTGGGTCATACTTCATTCCCAACCCAACTTTCAATTTTTCTCAACTCATTTTGGAGCTTCTAAAGTTCAGGTTGCTGATTGTGACACCAGAGAATTCACTGATCAGAAAAGAGAGGAGATGTTGGTCTCCGATTTTATAGCGCGTTGCCTTCTTCAAGAGGAGGCTTCTGCTGTTCAATGTAATAATGAAACTTGTTCAAGTAATGGTGCCTCTGTATCTGTACCGTATTTGAAGGATTGGCATTTTGTAAAGGAGTATCCTGAGTATGTAGCATATGAGACTCCAAGGTTCTTTTGTGATGACTGGCTCAATCTGTATCTTGACAACTTCAAAATCCATATTGATTCTGACACACAGCAACCGAATGAGGAAATATGTTGCTCTGACTATCGATTTGTTTACATAGGGGTGAAAGGATCTTGGACTCCTCTTCATGCTGATGTTTTCAGGTCCTATAGCTGGTCGTCAAATGTCTGTGGAAAGAAGAAATGGCTTTTTCTAGATCCTTCCCAGAATATGAAAAATTGTGTATATAATATCTTTGACGAAGTATCAAACTCGAAATTTCCTGGTTTTAGCAAGGCTATCTGGTTGGAATGCACACAAGATGCTGGTGAAATTATATTTGTTCCCAGCGGATGGTATCATCAAGTTCATAATTTGGAGGATACGATATCTATAAACCACAACTGGTTCAACGCTTATAACCTTTCCTGGGTGTGGAATTTACTTGTAAGAGACTACAATGAGGCCAAGGACTACATAGAAGACATCAAGGATATATGTGATGATTTTGAAGGTCTATGCCAGCGCAATCTTGCTGCTAACACAGGGATGAATTTTTATGACTTCTTTACTTTCATGTCATACTTCACCTTGGCCAACTTAGTGTTGCTTCGTTATATAAATAGAAGATATGGAAGTGCTACTGGAAGTTCATCAACAATAGCTCAGCATTTATCCATGAATCTTGGGTGTTTAAGGAAGACCGCTTCAGAAATGAAACACGTACGTGCTCTAGAAGGAAATAATAATTGCGTGGTGGATATTATCAAAGCATTTGAAGATCCTAGATTTTCCAAATTATGCATGCATGTAGGAAGAACATATGCCATGGTACATGAGCAATCTCACTTGGCCTCTGATTTCGAGAGCTCTACAATGACTGATTTGGTGGACTTCAATGATTCGAAATCATACACATCTCAGATCTACACACCTGAAGATCTTATTCAATTTATAGACAATGCAGTTGCAGAAGAGGAGCCATCTGTACTTCGTGTTACTTGA 1485 0.3906 MVILLEPKQKQILKRERVMGIIIKGEIERVNGKELSYIEFVDRYMEKNKPVVLTGLMDHWRAHTDWVILHSQPNFQFFSTHFGASKVQVADCDTREFTDQKREEMLVSDFIARCLLQEEASAVQCNNETCSSNGASVSVPYLKDWHFVKEYPEYVAYETPRFFCDDWLNLYLDNFKIHIDSDTQQPNEEICCSDYRFVYIGVKGSWTPLHADVFRSYSWSSNVCGKKKWLFLDPSQNMKNCVYNIFDEVSNSKFPGFSKAIWLECTQDAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLVRDYNEAKDYIEDIKDICDDFEGLCQRNLAANTGMNFYDFFTFMSYFTLANLVLLRYINRRYGSATGSSSTIAQHLSMNLGCLRKTASEMKHVRALEGNNNCVVDIIKAFEDPRFSKLCMHVGRTYAMVHEQSHLASDFESSTMTDLVDFNDSKSYTSQIYTPEDLIQFIDNAVAEEEPSVLRVT 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01284 494 Gene3D Cupin 5 297 - -
Vimu10g01284 494 ProSiteProfiles JmjC domain profile. 148 313 IPR003347 -
Vimu10g01284 494 SMART cupin_9 140 313 IPR003347 -
Vimu10g01284 494 SUPERFAMILY Clavaminate synthase-like 26 322 - -
Vimu10g01284 494 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 26 362 - -
Vimu10g01284 494 Pfam Cupin-like domain 39 296 IPR041667 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01284 Vimu-Chr10 13117776 13121606 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01284 25 305 Glycosyltransferase AT1G78280 24.324 3.26e-19 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vimu10g01284 Cupin_8 6.3e-20 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01284 - - gmx:100803814 861.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01284 10 13117776 13121606 Vimu10g01284 10 13117776 13121606 ECH