Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01268 ATGGCTCCACCTCCGCCGACTAAGGCTGTCTTTGGGAAGGAAGAGGATGTTTCAAAAGCACTTCGTGATAAAGTTGCTTCTCACCCACTATTTCCTTACCTCCTCCATGCCTACATCGATTGCCACAAGGTTGGAGCACCACAAGATATGGCAGACCTATTTGAAGGAATCAAAGAAGAGCACAGTGGAGTGTGTCAGATATCTGAATCTAAATCTTATCATAGCTTCTTGGGTGCTGATCCCGAACTTGATGATTTCATGGGAACGTTTTGCGATCTGTTGGTGAAGTACAAATCAGATCTTTCAAGACCCTTTAACGAGGCAACCATGTTCCTTAGCCACATGGAAACTCAGCTTCACTCCATCTGCAACGATCTTGCTGTCTCAGACAACACTCTTCCTCAGCCTGCAGTCACAGTTGGTGGATCATCTGGGAAAGATAGCATGGAGGGGATTAAGAGAATTGAAAACAAGAAGACATATGAAGTTGAAGAACTGAAGGATAATCTTCTAAGTAGATATAGTGGTTACATTACTAATCTGAAGCATGAATTTTCCAGAAAGAAGAAGAAAGAAAAGCTACCAAAAGAAGCAAAGAAAATCTTACTTGCATGGTGGAATATTCACTTTAAATGGCCATACCCAACGGATGCTGATAAGGTTGCCCTAGCTGAATGGACTGGTTTGGAGCAGAAGCAAGTAAATAATTGGTTTATAAACCAAAGGAAACGCCATTGGAAAGCATCAGAAGAAATGCAGGTTACAATTTTGGATGGACTCTATGGACCTTTGCACGAGTGA 801 0.4207 MAPPPPTKAVFGKEEDVSKALRDKVASHPLFPYLLHAYIDCHKVGAPQDMADLFEGIKEEHSGVCQISESKSYHSFLGADPELDDFMGTFCDLLVKYKSDLSRPFNEATMFLSHMETQLHSICNDLAVSDNTLPQPAVTVGGSSGKDSMEGIKRIENKKTYEVEELKDNLLSRYSGYITNLKHEFSRKKKKEKLPKEAKKILLAWWNIHFKWPYPTDADKVALAEWTGLEQKQVNNWFINQRKRHWKASEEMQVTILDGLYGPLHE 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01268 266 ProSiteProfiles 'Homeobox' domain profile. 185 248 IPR001356 GO:0003677
Vimu10g01268 266 Pfam ELK domain 165 186 IPR005539 GO:0003677
Vimu10g01268 266 CDD homeodomain 201 247 IPR001356 GO:0003677
Vimu10g01268 266 SMART ELK_2 165 186 IPR005539 GO:0003677
Vimu10g01268 266 Pfam Homeobox KN domain 205 244 IPR008422 GO:0003677|GO:0006355
Vimu10g01268 266 ProSitePatterns 'Homeobox' domain signature. 223 246 IPR017970 GO:0000981|GO:0006355
Vimu10g01268 266 SMART KNOX2_2 73 124 IPR005541 GO:0003677|GO:0005634
Vimu10g01268 266 Pfam KNOX2 domain 78 123 IPR005541 GO:0003677|GO:0005634
Vimu10g01268 266 Gene3D - 183 255 - -
Vimu10g01268 266 ProSiteProfiles ELK domain profile. 165 185 IPR005539 GO:0003677
Vimu10g01268 266 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 36 253 - -
Vimu10g01268 266 Pfam KNOX1 domain 21 60 IPR005540 GO:0003677|GO:0005634
Vimu10g01268 266 SUPERFAMILY Homeodomain-like 187 258 IPR009057 -
Vimu10g01268 266 SMART KNOX1_2 19 63 IPR005540 GO:0003677|GO:0005634
Vimu10g01268 266 SMART HOX_1 187 252 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01268 Vimu-Chr10 12836389 12845807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01268 20 262 Homeobox Transcription Factor Family AT1G23380 50.201 3.50e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vimu10g01268 KNOX2 7.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01268 - - gmx:102662019 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01268 10 12836389 12845807 Vimu10g01268 10 12836389 12845807 ECH