Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01257 ATGCAGAGCGCGGCTTTCACTCTCTCTCCGTCGCTCTCTCTTCCTCTCCGTAACTATTCTCTAAACGCTTCTAGACCTTCCCTACCTCTCAGACTTTTCGCCAAACACACAGAAGGCGTGAACTCCAATGGCGCCTCTTCCACTTCCTTCCTCCGTCGATCTTGGACTCTCTCTCCTTCCTCTTCCTTCAAGTTCCGCCCGCTCCCTCCCTCTCCTCCGCGCGCCGCGGAGAACGCCGTTCCCGACAGCGCGCCTGCCGAAAATTCTCTCTTCAAAACACTCGAGCTCGGCGCCTTGTTTGGCCTCTGGTACCTCTTCAACATCTACTTCAATATCTACAACAAACAGAATCCTTTAAGTGGATATTTGGATTATGGTTTCGGATTCTCTGTGGTAATGTTCAGGAATTGTAAGGTGTTGAAGGCGTTTCATTATCCGGTAACTGTGACTGTTGTTCAATTTGCGGTTGGGACTGTGCTCGTGGCGATTATGTGGGGTTTGAATCTCTACAAGAGGCCGAAGATCAGTGGTGCTATGCTTGGAGCGATTTTGCCACTGGCTGCGGTGCATACTTTGGGGAATCTTTTCACTAATATGAGTCTTGGGAAGGTGGCCGTGTCTTTCACTCACACTATCAAGGCCATGGAGCCTTTCTTTTCAGTGATCCTTTCTGCCATGTTCCTTGGAGAGTTTCCTACACCGTGGGTGGTTGGTTCCCTTGTCCCTATTGTTGGTGGAGTTGCACTGGCGTCTGTTACTGAGGCCTCTTTCAACTGGGCCGGATTTTGGAGTGCAATGGCCTCAAATGTGACAAATCAATCCCGTAATGTTCTTAGCAAAAAGGCTATGGTTAAGAAAGAGGATTCTATGGACAATATCACTCTCTTCTCTATAATAACAGTAATGTCCTTCTTCTTATTAGCACCAGTGGCTGTCTTCATGGAGGGTGTCAAATTTACCCCTGCTTACTTGCAATCTGCTGGGTTAAATGTTAAACAACTTTACGTCAGATCTCTTCTTGCCGCACTCTGCTTCCATGCGTATCAACAAGTGTCTTATATGATATTACAAAGGGTATCACCTGTTACCCACTCTGTGGGCAATTGTGTGAAGCGGGTTGTGGTCATTGTGAGCTCTGTCATTTTCTTCCAAACACCTGTCTCACCAGTGAATGCTTTTGGTACTGCTATAGCTCTTGCTGGCGTGTTCCTCTATTCAAGGGTGAAGCGAATTAAGTCAAAGCCAAAATCAGCTTAA 1257 0.4726 MQSAAFTLSPSLSLPLRNYSLNASRPSLPLRLFAKHTEGVNSNGASSTSFLRRSWTLSPSSSFKFRPLPPSPPRAAENAVPDSAPAENSLFKTLELGALFGLWYLFNIYFNIYNKQNPLSGYLDYGFGFSVVMFRNCKVLKAFHYPVTVTVVQFAVGTVLVAIMWGLNLYKRPKISGAMLGAILPLAAVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVILSAMFLGEFPTPWVVGSLVPIVGGVALASVTEASFNWAGFWSAMASNVTNQSRNVLSKKAMVKKEDSMDNITLFSIITVMSFFLLAPVAVFMEGVKFTPAYLQSAGLNVKQLYVRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPVNAFGTAIALAGVFLYSRVKRIKSKPKSA 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01257 418 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 132 416 IPR004696 GO:0016020|GO:0022857|GO:0055085
Vimu10g01257 418 SUPERFAMILY Multidrug resistance efflux transporter EmrE 163 252 - -
Vimu10g01257 418 SUPERFAMILY Multidrug resistance efflux transporter EmrE 326 409 - -
Vimu10g01257 418 Pfam Triose-phosphate Transporter family 131 406 IPR004853 -
Vimu10g01257 418 PANTHER SOLUTE CARRIER FAMILY 35 95 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01257 Vimu-Chr10 12672174 12675735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01257 1 418 Antiporters AT5G33320 67.727 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01257 K15283 - gmx:100804563 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00659 7 6599268 6601890 Vimu10g01257 10 12672174 12675735 ECH
Vimu10g01257 10 12672174 12675735 Vimu10g01257 10 12672174 12675735 ECH
Vimu7g00659 7 6599268 6601890 Vimu10g01257 10 12672174 12675735 PCT