Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01251 ATGGGAAAGATGAAGTCAAGTGTCTTTTCTTCAGATTTGGTTCACCCTCCTATTTTACTTTTCCTACTTCTTTTATCACAGTATTCCATTGAACCAGCATCTTGTGCCTCCATAGTGAAGTTCCTTCCAGGATTCGAGGGACCCCTTCCTTTTCTTCTTGAAACTGGGTATGTGGGAGTGGGAGAATCAGAGGATGTCCAAACATTTTACTACTTTATTGAGTCAGATAACAACCCCAAGGAAGATCCTCTCATGCTTTGGTTATCCGGTGGCCCTGGTTGTTCATCCCTAAGTGGCCTTTTTCTTGAAATAGGTCCACTTGCATTAAAACATGAGGAGTACAATGGAGGTACACCCAACTTGATCTTCAGGAATCAATCATGGAACAAGGTTAGTAACATTATATATGTAGACTTGCCTGTTTTCACGGGCTTTACTTATGCAAGAAGTGAACTTGCTGCTCAAAGTAGTGATAAGTTGTTAGCTCGTCAAGCTCATGAATTTCTAAGGAAGTGGTTAATTGATCATCCAAAATTTTTGTCAAACGAAGTTTACATTGCTGGTGATTCATATTCTGGCATTCCCCTTCCAGCAATTGTTCTAGAAATTGTACAAGGTAATGAAGAAGGGTTTCAACCAAGGATAAATCTCCAGGGATACCTTTTGGGGAATCCAATAACAACTGGAAGGGACCGAAACTATGAAATCCCTTTTGCTCATGGAATGGCACTTATTTCTGATGAATTATATGAGTCACTACAAGAAAATTGTAAAGGAAACTACATTAATGTGGACTCCGAAAATGCATTATGTTATAAAGATTTGGAGACATTCGATAAGCTTGTATCGGGACTTTCTACTTACAATATTTTGGAGCCGTTGTGTGATTTCGATCATTCTCTACCTCCTTTGAGAAGATCCCTAAATGAGAAATTTTCTGCAAAGAATTTCTTGAAAACTGATCTCGAACTGCCAAACATAGAATGTCCGACATATACATCATTCCTATCTGCTTATTGGGCAAATGATGATAATGTTCGAACTGCACTTAATGTTCGCAAGGGAAGTATAGGAACATGGATTCGTTGTCATCAGGATGAACGTTTCACGTTCGATATTTCAAGCAGCGTTGAATATCACGCAAATCTTAGTAGAAAAGGCTATCGTTCATTAATATACAGTGGCGATCATGACATGGTGTGTCCTTTCTTGGGAACTCAAGATTGGATAAGATCTTTAAACTACTCTATTGTTGATGATTGGAGGCCATGGATTTCAAATGGTCAAGTTGGAGGGTATAATTTTATAACTTTCTTTTTTTCTCTTAGATACACAAGGACTTACTCTAATCAAATGACATTTGCAACTGTGAAGGCAAGTATCTTATTCTCCTTGTTACACTTGGTGCGGGCCACACAGCTCCGATGTACAAATCGGAAGAATGTTTTGACATGTTCAGCAGATGGATTTCTAAAAGGGCTTTGTAGGAAAATAAAACGAAGACCATTGACCGAATTTAGTTGTTTCCTAATAAATGTGTTTTAA 1545 0.3819 MGKMKSSVFSSDLVHPPILLFLLLLSQYSIEPASCASIVKFLPGFEGPLPFLLETGYVGVGESEDVQTFYYFIESDNNPKEDPLMLWLSGGPGCSSLSGLFLEIGPLALKHEEYNGGTPNLIFRNQSWNKVSNIIYVDLPVFTGFTYARSELAAQSSDKLLARQAHEFLRKWLIDHPKFLSNEVYIAGDSYSGIPLPAIVLEIVQGNEEGFQPRINLQGYLLGNPITTGRDRNYEIPFAHGMALISDELYESLQENCKGNYINVDSENALCYKDLETFDKLVSGLSTYNILEPLCDFDHSLPPLRRSLNEKFSAKNFLKTDLELPNIECPTYTSFLSAYWANDDNVRTALNVRKGSIGTWIRCHQDERFTFDISSSVEYHANLSRKGYRSLIYSGDHDMVCPFLGTQDWIRSLNYSIVDDWRPWISNGQVGGYNFITFFFSLRYTRTYSNQMTFATVKASILFSLLHLVRATQLRCTNRKNVLTCSADGFLKGLCRKIKRRPLTEFSCFLINVF 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01251 514 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 136 IPR001563 GO:0004185|GO:0006508
Vimu10g01251 514 PRINTS Carboxypeptidase C serine protease (S10) family signature 172 197 IPR001563 GO:0004185|GO:0006508
Vimu10g01251 514 PRINTS Carboxypeptidase C serine protease (S10) family signature 137 147 IPR001563 GO:0004185|GO:0006508
Vimu10g01251 514 Gene3D - 329 468 - -
Vimu10g01251 514 SUPERFAMILY alpha/beta-Hydrolases 39 435 IPR029058 -
Vimu10g01251 514 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 37 460 IPR001563 GO:0004185|GO:0006508
Vimu10g01251 514 Pfam Serine carboxypeptidase 43 458 IPR001563 GO:0004185|GO:0006508
Vimu10g01251 514 FunFam Serine carboxypeptidase-like 19 33 301 - -
Vimu10g01251 514 Gene3D alpha/beta hydrolase 34 301 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01251 Vimu-Chr10 12557837 12563326 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01251 33 62 Calmodulin-binding Proteins AT2G22960 73.333 1.85e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01251 K16296 - gmx:100792006 597.045