Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01243 ATGGATATTGAGACACTGCTAGAAAACTTTGTCCCACAGCCCTTACAAGAAAGCTGTATGAAAGATATGATTCCTTTGGGAAATCCTTCATCGCAAGAATGCTTGCAAGATTTTCACCATATTGATCAGTTTCACTTCAATGTGCCCTCAACCAATAATTCTATAATCCAGACACCAACTTTTGATGCTTTTGAAAATTTCACCTTTTCAGGTTCATCTGCTTTAGATGTATACGAGAGCAAGCCTTTTGCGGAGAATAGGCATACTAATGTCATGGACAATTTCCTTTATGGAAATTATAACATGATTCTCCCTCAAAGGAATAATGTTGAACTCGATCTGATGCTTGCAGATCAAAGCTTTTTGCCTTTTACTCCTCAAGAAATCAAACCCTCCAATTTTGTTTTGCCAGATGAAGTTTCATCCATATCCCCGATGAATTATTACAAAAGAATTGGCGTTAACAAAAATAATAAATCCTATCCAACCACTCGAAGAACCTACAAAGTTCGCAAGAAGTCCAACACAGTAAAGGGGCATTGGACAATAGAAGAAGATGGATTATTGATTCAACTGGTGGAACAATACGGATTGAGGAAGTGGTCTCATATAGCTAAGCTACTGCCTGGAAGGATTGGAAAACAGTGCAGAGAGAGATGGCATAACCATCTAAGGCCTGATATTAAGAAGGACACATGGAATACTGAAGAGGATAAGATACTAATCGAAGCTCATGCTGAGGTAGGAAACAAATGGGCAGAGATTGCTAAAAGGTTGCCTGGAAGAACTGAGAACTCAATCAAAAACCACTGGAATGCAACCAAGAGAAGGCAATATTCCAAAAGAAAGTGCAGATCCAAGCACCCCAGAGGCACTCTTCTACAAGAGTATATCAAGAGCTTGAACTTAGACAAGAACCCCCCAATTGATTATAGGAGAAAATCTGCTATCAAAACCAGCACAAGCAAATCCACTGCACCAGCTTTGCCCCAGACTGCTTCTCAATTTTCTGCCATTGAAAGCTTGGCACCAGATTCTGATTTCAATGTGGTCCCAGATTTTCTCTTTGGTGACAATCTCTTCCAAGAAGATTGCAATATTAATTCCCTTCTAGATGCTGTGCCTTGTGTTCCTTTCAAGGATAACAAAAATTGTGAAGGAAAATTGCAATGTGATCCTATGCTGGAGGGAATGCAGCATTGCGAATATGGAGGAATAGAGTGTTTTGCAGCTGTTAATGGAGATGAGAATCATGTTGAGATGCAACCAGAGATGTTGGAAGTTGAAGTTAAGAAGGAGCTGGATTTGGTTGAGATGATCTCTCAGATTAATAATGAAACTTTTCATGTTTAA 1353 0.3932 MDIETLLENFVPQPLQESCMKDMIPLGNPSSQECLQDFHHIDQFHFNVPSTNNSIIQTPTFDAFENFTFSGSSALDVYESKPFAENRHTNVMDNFLYGNYNMILPQRNNVELDLMLADQSFLPFTPQEIKPSNFVLPDEVSSISPMNYYKRIGVNKNNKSYPTTRRTYKVRKKSNTVKGHWTIEEDGLLIQLVEQYGLRKWSHIAKLLPGRIGKQCRERWHNHLRPDIKKDTWNTEEDKILIEAHAEVGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKHPRGTLLQEYIKSLNLDKNPPIDYRRKSAIKTSTSKSTAPALPQTASQFSAIESLAPDSDFNVVPDFLFGDNLFQEDCNINSLLDAVPCVPFKDNKNCEGKLQCDPMLEGMQHCEYGGIECFAAVNGDENHVEMQPEMLEVEVKKELDLVEMISQINNETFHV 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01243 450 PANTHER MYB PROTEIN-RELATED 160 320 - -
Vimu10g01243 450 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 229 279 IPR017930 -
Vimu10g01243 450 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 173 228 IPR017930 -
Vimu10g01243 450 SMART sant 177 226 IPR001005 -
Vimu10g01243 450 SMART sant 229 277 IPR001005 -
Vimu10g01243 450 Pfam Myb-like DNA-binding domain 181 239 - -
Vimu10g01243 450 FunFam Transcription factor MYB119 231 295 - -
Vimu10g01243 450 SUPERFAMILY Homeodomain-like 176 271 IPR009057 -
Vimu10g01243 450 ProSiteProfiles Myb-like domain profile. 173 224 IPR001005 -
Vimu10g01243 450 CDD SANT 232 275 IPR001005 -
Vimu10g01243 450 ProSiteProfiles Myb-like domain profile. 225 275 IPR001005 -
Vimu10g01243 450 Gene3D - 232 295 - -
Vimu10g01243 450 CDD SANT 181 224 IPR001005 -
Vimu10g01243 450 FunFam Transcriptional activator Myb isoform A 177 230 - -
Vimu10g01243 450 Gene3D - 177 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01243 Vimu-Chr10 12469931 12472098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01243 46 375 MYB Transcription Factor Family AT4G18770 46.328 9.20e-92 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu10g01243 Myb_DNA-bind_6 2.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01243 K09422 - gmx:102662267 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00660 7 6605536 6607178 Vimu10g01243 10 12469931 12472098 ECH
Vimu10g01243 10 12469931 12472098 Vimu10g01243 10 12469931 12472098 ECH
Vimu7g00660 7 6605536 6607178 Vimu10g01243 10 12469931 12472098 PCT