Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01242 ATGTATACATTCATGTATAACTTTGCTAAGGATCGTGAGGATTTGGGACACAAACTATTCCTACCTTGGACTGGATGGGTGTGTGTTTGGACTGCTCTGTTGCTTTTCTTGCTGGCCATTCTTGGTGCATGCTCCATAATCAATAGATTCACACGTGTTGCTGGCGAATTATTTGGTCTGTTAATTGCAATGCTCTTTATGCAGCAGGCTATAAAGGGACTTGTGGAAGAGTTTGGTGTGCCTAAGAACCAGAGAGAAGGTACCAATCAGATTGCCCTCCAGTCATCTTGGTTGTTTGGCAATGGAATGTTTGCTTTGGTTTTGTCATTTGGTCTTCTTTTTAGTGGTCTACAAAGCCGCAAAGCTAGATCCTGGCGTTACGGGTCAGGTTGGCTACGGGGATTCATAGCTGATTATGGAGTCCCTCTAATGGTTCTGATATGGACTGCTGTGTCTTACATACCAGTCAATAAGGTTCCAAGGGGAGTCCCTAGGCGACTTTTCAGTCCAAATCCATGGTCTCCTGGTGCATACTCAAATTGGACTGTTGTCAAGGAAATGTTGAATGTGCCCATTCTGTATATTATTGGAGCATTTATACCAGCAACTATGATTGCTGTGCTTTACTACTTCGATCACAGTGTTGCATCACAACTTGCTCAGCAGAAGGAGTTCAATCTAAGAAAACCGTCATCTTATCATTATGATTTGCTGCTCTTGGGATTTTTGACCATATTGTGTGGGCTTATTGGAATCCCTCCTTCTAATGGTGTGATTCCTCAATCTCCAATGCACACGAAGAGCTTAGCTACTCTAAAACATCAGCTTTTACGGAATAAGCTTGTATCTACTGCACGAAAAAGCATGAGGAGGAATGTTAACTTGAGCCAGTTGTACCAAAATATGAAAGAAGCATATGATGAAATGCAGACTCCATTGGTTCCCCAAATGCCACCAACCTTGGGGCTGAAAGAACTGAAGGAATCTACTATTGAACTGGCTTCAAGTCATGGATATATTGATGCCCCTGTTGATGAGGTTGTCTTTGATGTGAATAAGGATGTTGATGACCTTTTGCCAGTTGAAGTTAAAGAGCAACGTCTAAGCAATCTGCTTCAGGCATTGATGGTTGGAGCTTGTGTTGCTGCTATGCCCCTTTTGAAGAAGATACCCACTTCAGTGCTTTGGGGCTACTTTGCCTTTATGGCCATTGAAAGCTTACCAGGAAATCAGTTTTGGGAGCGAATCTTGTATCTTTTCACTGCCCCAAGTCGAAGATACAAACTGCTGGAGGAATACCATGCCACCTTTGTTGAGACCGTTCCCTTCAAAACAGTTGCCATGTTTACTGTGTTCCAGACAGTGTACTTGCTTCTCTGCTTTGGCTTAACCTGGATACCAATTGCTGGGGTCCTTTTCCCACTGTTAATCATGCTTCTCGTCCCAGTACGGCAATATTGCCTTCCAAAGTTTTTCAAAGGTGCCCATCTTCAAGAGCTGGATGCAGCAGCATATGAAGAAGCACCTGCCATTGCTTTCAACATGTCCTTTGAAGGTCCAGGTGGAGAAGCACCAGCAGTAAATATAAGTGGTGGGGAAATTCTTGATGAAGTTATTACTCGGAGTCGTGGAGAGATTCGACGGACACAAAGCCCGAAAACAACAAGTTCAACACCAACTTCAACCGGAGATATAAGACCAGCTAGTAGCCCTCGGATAGGAAGAAGCATTCCTAGCCCTCGAGTGACTGAATTGAGAGGGGAAAGCAGTCTGAGACCAACTGGGAAGGAGATCAAGTTAATACAAACACCTAGTCCACGCTCACCAGTTCTTGGAAAAGTTACCAAAGGTTCACCTTCAAGCTAA 1866 0.4384 MYTFMYNFAKDREDLGHKLFLPWTGWVCVWTALLLFLLAILGACSIINRFTRVAGELFGLLIAMLFMQQAIKGLVEEFGVPKNQREGTNQIALQSSWLFGNGMFALVLSFGLLFSGLQSRKARSWRYGSGWLRGFIADYGVPLMVLIWTAVSYIPVNKVPRGVPRRLFSPNPWSPGAYSNWTVVKEMLNVPILYIIGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTILCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVSTARKSMRRNVNLSQLYQNMKEAYDEMQTPLVPQMPPTLGLKELKESTIELASSHGYIDAPVDEVVFDVNKDVDDLLPVEVKEQRLSNLLQALMVGACVAAMPLLKKIPTSVLWGYFAFMAIESLPGNQFWERILYLFTAPSRRYKLLEEYHATFVETVPFKTVAMFTVFQTVYLLLCFGLTWIPIAGVLFPLLIMLLVPVRQYCLPKFFKGAHLQELDAAAYEEAPAIAFNMSFEGPGGEAPAVNISGGEILDEVITRSRGEIRRTQSPKTTSSTPTSTGDIRPASSPRIGRSIPSPRVTELRGESSLRPTGKEIKLIQTPSPRSPVLGKVTKGSPSS 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01242 621 PANTHER ANION EXCHANGE PROTEIN 1 509 IPR003020 GO:0005452|GO:0006820|GO:0016020
Vimu10g01242 621 MobiDBLite consensus disorder prediction 541 621 - -
Vimu10g01242 621 Pfam HCO3- transporter family 361 451 IPR011531 GO:0006820|GO:0016020
Vimu10g01242 621 Pfam HCO3- transporter family 103 274 IPR011531 GO:0006820|GO:0016020
Vimu10g01242 621 Pfam HCO3- transporter family 19 79 IPR011531 GO:0006820|GO:0016020
Vimu10g01242 621 MobiDBLite consensus disorder prediction 549 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01242 Vimu-Chr10 12442837 12447788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01242 1 596 Antiporters AT3G62270 73.456 0.0 882
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01242 K24194 - gmx:100793554 1135.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01242 10 12442837 12447788 Vimu10g01242 10 12442837 12447788 ECH
Vimu7g00662 7 6619286 6628089 Vimu10g01242 10 12442837 12447788 PCT