Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01210 ATGAAGAAGAGATTAGCAGCAAGCACCATCGATGATTCCACTAAACTTGATCGAAAAACCATCGAAAGAAACCGCAGAATTCACATGAAATCCCTCTGCCATCAGCTTGGTTCTCTTATTCCTCCAAACCTCAAACCACCCAAATCCAAGCTGATGCTAGGGCAGCAGGACCAACTGGATCTCGCAGCAAGGTACATAAAACACATGAGAGAGAGAATAGAGAAATTGAAGAGGCAGAAGGAGCAAGCGATGTTGAACCAAAGCAGTGAAAGAAAAATGTTTGATAAAAACGATGAGACCAAGTTGCCAATACTTGAGCTAAGAGACTTGGGTTCCGGCATCGAAGTGATGCTGGTGAGTGGGTTGAACAAGACATTCATGTTGTACGAAGTAATCAGCGTTCTTGAGGAAGAAGGTGCTGAAGTTGTCACTGCAAGCTTCTCAACTGTCGGCGACAAGTTATTTTACGTTGTTCACGCTCAGGTTAAAATATCAAGAGTTGGCGTGGAGACGACAAGGGTAAAGGATAGACTTCAAGAATTTATTGCCCCATTAGAAATTTGGCCGGAAGACGTGTGA 579 0.437 MKKRLAASTIDDSTKLDRKTIERNRRIHMKSLCHQLGSLIPPNLKPPKSKLMLGQQDQLDLAARYIKHMRERIEKLKRQKEQAMLNQSSERKMFDKNDETKLPILELRDLGSGIEVMLVSGLNKTFMLYEVISVLEEEGAEVVTASFSTVGDKLFYVVHAQVKISRVGVETTRVKDRLQEFIAPLEIWPEDV 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01210 192 Gene3D - 7 98 IPR036638 GO:0046983
Vimu10g01210 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 69 IPR011598 GO:0046983
Vimu10g01210 192 SMART finulus 19 75 IPR011598 GO:0046983
Vimu10g01210 192 Pfam Helix-loop-helix DNA-binding domain 18 69 IPR011598 GO:0046983
Vimu10g01210 192 Coils Coil 59 86 - -
Vimu10g01210 192 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 12 181 - -
Vimu10g01210 192 FunFam Transcription factor bHLH162 6 97 - -
Vimu10g01210 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 87 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01210 Vimu-Chr10 11966894 11967925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01210 6 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 33.862 2.19e-25 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu10g01210 HLH 5.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01210 - - gmx:100790403 310.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00681 7 6844786 6845705 Vimu10g01210 10 11966894 11967925 ECH
Vimu10g01210 10 11966894 11967925 Vimu10g01210 10 11966894 11967925 ECH
Vimu7g00681 7 6844786 6845705 Vimu10g01210 10 11966894 11967925 PCT