Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01208 ATGGAGATTGTGATTTCTTTGATCATATTGTTTGTGGGTATAGCGATTTTGGTGATCATCCATGTCTGCATCGTGGGGAGAGTCTTCAGAGATGAAGAAGGTACTCAACAGAGGCAGAACATGAGTGGAATGAAAAGAATGTTGGGTGAAGACAACATTAGTGACATCAAAAACCTTCCTTGCTTTGTGTACGAGGAGGCAGCAGCAGCAGCATCAGCATCAGCATCAGCAGAGAGAAGAGGGTGTAGCAGCCCCGTCGATTGTGCTGTTTGCTTGGAGAGTTTCAAGGTTGGTGATTTCTGCAGGTTGTTGCCCAATTGCAATCACACCTTCCATCTGCACTGTATAGACTCATGGATTCTCCACACACCCATCTGTCCCATTTGCAGAACATGGGTTCTTTCAGTAAGAGAACAGCAAAGTTATGCTTCTGAGAATGTAGAAATTGTAACATCATAG 459 0.4423 MEIVISLIILFVGIAILVIIHVCIVGRVFRDEEGTQQRQNMSGMKRMLGEDNISDIKNLPCFVYEEAAAAASASASAERRGCSSPVDCAVCLESFKVGDFCRLLPNCNHTFHLHCIDSWILHTPICPICRTWVLSVREQQSYASENVEIVTS 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01208 152 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 3 135 - -
Vimu10g01208 152 Pfam Ring finger domain 87 130 IPR001841 -
Vimu10g01208 152 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Vimu10g01208 152 SMART ring_2 88 129 IPR001841 -
Vimu10g01208 152 SUPERFAMILY RING/U-box 87 142 - -
Vimu10g01208 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 139 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01208 Vimu-Chr10 11955675 11957519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01208 56 134 C3H Transcription Factor Family AT3G18930 46.835 7.59e-18 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01208 - - vum:124841729 264.233