Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01205 ATGAACAGCGATTTCTATCGACTCGCAGTTTCATCGCACTTCAGCAGTTTCCCCAAATCCTTCTCTCTGAGAAAGAAAGTGCCATGGTGGTACCAAATCCTAAACCCTCGATCCAAGTTCGTGGCCAGATGGAATCGCACCTTCCTCTATGTCTGCATCGCTGCGCTCTTCCTCGACCCTCTCTACTTCTATTTTCCCATCACGGGGGACAAGGCCTGCATGCAGACCGACCTCGTCCTCGGAGTCTTCGTCACCTTCTCCCGCACCGTCGCCGACCTCTTCTTCCTCTTCCACATGGTCCTCAAGTTCCGCACCGCCTACGTCGCTCCCACCTCTCGCGTTTATGGCCGCAAAGAACTCGTCACAGATCCTCGTGACATCGCCTCACGCTACCTCAAATCTGATTTCATTATCGATCTCCTCGCAACCCTTCCTCTTCCTCAGATAGTGGTATGGTTCGTGATTCCAGCGGTGAAAAATTCTACGGTAGCTCATGTAAATCACACTCTTTCTTTGATTGTGCTCATTCAGTTTATTCCTAGGTTGTTTCAAATTTTTCCTCTGCAAAGAAGAATCTTGAAGACCAGTGGACTTATTGCCAAAACTGCCTTGGCAGGAGCCTTATACAATCTTGGTTCCTACATGCTCGCTAGCCATGTTTTAGGAGCTACTTGGTACGTAGCTTCAATTCAGAGACAGTATGAATGTTGGATAATAACATGTAAACAAGAGATGAACAATACGCATTCCCCAACTTGTACTCCTTCGTTTTTGGACTGTGCTACTCTTGACCACCGAGAAAGACAAGCTTGGTTCAAACGCACCAGAGTTCTCAGTAATTGCGACGCCCTCAATAACAAAAATGAGTTTCAGTTTGGACTTTTCGCTGATGCTTTCACCGATCACGTTTCCTCATCAAGATTCGTTCAAAAATACTTCTACTGTCTCTGGTGGGGTTTGAAGAATCTAAGTTCATACGGACAAAATCTTCAGACTAGCACTTACAGTGGTGAAACATTGTTTTCAAGTTTCATATGCATCGCAGGTCTAATCCTGTTCGCGCATCTCATTGGAAACATGCAGAATTATCTGCAATCTACAACTGCAAGAATTGAAGAGTGGAGACTTAGACAAAAAGATACAGAAGAGTGGATGAATCATCGGCAGCTACCACCAGAACTGCAACAACGGGTTCGAAGGTTTGTTCAATATAAATGGCTGGCCACCAGAGGAGTAGACGAAGAAGCCATTTTGCGTGCTTTGCCTTTGGATCTTCGCCGCCAGATTCAGAGGCACCTCTGTCTCGACATTGTTCGTCGGGTTCCATTTTTCGGGCAAATGGATGACCAGCTTCTGGACGCAATATGCGAGAGGCTGGTGTCGTCACTGAACACAAAGGACTCGTATATCGTGCGAGAAGGCGATCCAGTGAGGGAGATGCTCTTCATCATCAGAGGGCAGGTGGAGAGCTCCACCACCGACGGTGGCAGAACAGGGTTCTATAACTCCATCACCCTACGACCAGGGGACTTCTGCGGCGAGGAGTTGCTTACGTGGGCCCTCATGCCCTCCTCAAACCTCAACCTCCCTTCCTCCACGCGCACCGTGAAGTCCATCTCGGAAGTGGAGGCTTTCGCGCTCCGCGCTGAGGACCTAAAATTCGTGGCGAACCAGTTCAAGCGGCTCCACAGCAAGAAGCTGCAGCACGCCTTCCGCTACTATTCCCACCAGTGGAGGGCATGGGGGGCCCACTTCATCCAGGCGGCATGGAGGCGGCACCGCAAGAGGAAGCTGGCGATGGAGCTGCTGGGGAAGGAGAGCCTGTACTACACGAATGTGATGGAGATAGTAGAGGAGGATGATGTTGATGATGATGAAGGTGATGATGGAGGTGGTGCAGGTGAGAGTTCGAGTGGTCCCAGCGTAGGTTTTCAGAATCTTGGGGCTACCGTTTTAGCCTCTAAGTTCGCTGCGAACACCAGAAAAGGAAAGGTTAAGACGGTGAAAATTAATCTTCCTGATTCTGATAGTTTGAAGATGCCCAAGATGTTCAAGCCTACGGAACCTGATTTCTCGACTTTCCATGATTAA 2091 0.4902 MNSDFYRLAVSSHFSSFPKSFSLRKKVPWWYQILNPRSKFVARWNRTFLYVCIAALFLDPLYFYFPITGDKACMQTDLVLGVFVTFSRTVADLFFLFHMVLKFRTAYVAPTSRVYGRKELVTDPRDIASRYLKSDFIIDLLATLPLPQIVVWFVIPAVKNSTVAHVNHTLSLIVLIQFIPRLFQIFPLQRRILKTSGLIAKTALAGALYNLGSYMLASHVLGATWYVASIQRQYECWIITCKQEMNNTHSPTCTPSFLDCATLDHRERQAWFKRTRVLSNCDALNNKNEFQFGLFADAFTDHVSSSRFVQKYFYCLWWGLKNLSSYGQNLQTSTYSGETLFSSFICIAGLILFAHLIGNMQNYLQSTTARIEEWRLRQKDTEEWMNHRQLPPELQQRVRRFVQYKWLATRGVDEEAILRALPLDLRRQIQRHLCLDIVRRVPFFGQMDDQLLDAICERLVSSLNTKDSYIVREGDPVREMLFIIRGQVESSTTDGGRTGFYNSITLRPGDFCGEELLTWALMPSSNLNLPSSTRTVKSISEVEAFALRAEDLKFVANQFKRLHSKKLQHAFRYYSHQWRAWGAHFIQAAWRRHRKRKLAMELLGKESLYYTNVMEIVEEDDVDDDEGDDGGGAGESSSGPSVGFQNLGATVLASKFAANTRKGKVKTVKINLPDSDSLKMPKMFKPTEPDFSTFHD 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01205 696 Gene3D - 47 367 - -
Vimu10g01205 696 MobiDBLite consensus disorder prediction 674 696 - -
Vimu10g01205 696 Pfam Ion transport protein 44 370 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vimu10g01205 696 FunFam Cyclic nucleotide-gated ion channel 1 441 559 - -
Vimu10g01205 696 SMART cnmp_10 443 574 IPR000595 -
Vimu10g01205 696 SUPERFAMILY cAMP-binding domain-like 373 568 IPR018490 -
Vimu10g01205 696 CDD CAP_ED 443 574 IPR000595 -
Vimu10g01205 696 Gene3D Helix hairpin bin 369 434 - -
Vimu10g01205 696 MobiDBLite consensus disorder prediction 621 644 - -
Vimu10g01205 696 ProSiteProfiles cAMP/cGMP binding motif profile. 443 573 IPR000595 -
Vimu10g01205 696 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 25 691 - -
Vimu10g01205 696 SUPERFAMILY Voltage-gated potassium channels 36 365 - -
Vimu10g01205 696 Pfam Cyclic nucleotide-binding domain 466 553 IPR000595 -
Vimu10g01205 696 Gene3D Jelly Rolls 441 561 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01205 Vimu-Chr10 11934243 11936995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01205 8 691 Ion Channels AT3G48010 64.347 0.0 920
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01205 K05391 - gmx:100783672 1238.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01205 10 11934243 11936995 Vimu10g01205 10 11934243 11936995 ECH