Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01201 ATGCATAGGTCCACACGAAGCTGTTATTTCAGTACATATCCAAAGGTCTTGTTGGTTGTTGAGATAGCGAAGAAGAAGGAGATTGCGGGGACATTAGTTTTTGAAACCTGCTTTGATTTTCTTCTTCTCTCTCTGTTTTCTGTGTGTTGCTTCGATCAGTTTGATGCTATTAAGGGAGACACTTTTATTTCCATTTTAGAGCAACTGGGTGGATTTATTTCCTTTCTTAATTTAGAAAAGAGATTGAGGGTTTTTCTGAGTTTAATTGATATATATTTGAATGGAAGTGAAGAAATTGACACCTCCTTAGCAGTGTTGTACCTAGCCGTCCTATGCCTTCTAGTTCACAGGCTTCATATGAGAGACAAAATAATAATTGCTTCTCTTCTACCTTTGCAGGTAACTGCATTTCTTTGGATTGATTTCAAGATCTTTTCAGGGGATATGCTAAATTTCCCTCAAACTCCCAGATCTCTTCCACGAGTTATGACTGATCCAGTAATCGTTTCTCATGGAGATGGTAAACAAAGTAATGATGACGATTCGGGTGTTAATTCATCTGAACACCGTCGCAAGATAATTATAGTATCAAATTCTCTTCCAGTCAATGGGAAAAGGGATAAGGTATCTGGCAGATGGTGCTTCAGTTATGATGAGGATTCAATTTTTTGGCAGTTAAAGGATGGTCTTTCTCCTGATGCTGATGTGGTGTATGTGGGATCTCTGAAGGTTGATGTTGATGCAAGTGAGCAAGATAAAGTTTCCCTTCAGTTGATGGAGGAATTCAACTGCTTGCCTACTTTTATTCCTCCAGAGCTCTACAAGCAATTCCATGATGGATTCTGCAAGCAGCATTTGTGGCCTCTATTCCATTACATGTTGCCCATGTATCCAGGCAATCAACGCTTTGACAGGTCACAGTGGCAGGCTTATGTTTCTGCTAACAAGATATTTGCAGATAAAGTCATGGAGGTCCTTAATCCAGAAGATGATTATGTATGGGTTCATGATTATCATCTTATGGTACTTCCCACTTTTCTGCGGAAGCGTTGTAGTCGAGTCAAGCTTGGTTTTTTCCTCCACAGTCCATTTCCTTCATCAGAAATTTATAAAACTCTGCCTGTCAGAGGTGAAATTTTGAAAGCACTGCTTAATGCAGATTTAGTTGGTTTTCACACCTTTGATTATGCTCGCCATTTTCTTTCCTGCTGCAGACGAATGCTAGGCTTGGAACATGAATCCAAGAGGGGTTACATTGGGCTTGAATACTCTGGTCGCACAATATTCATTAAAATTTTGCCTGCTGGGATTCACATGGGTCGACTTCAATCAGCCTTAGAGCATCCTTCCTCTTCTGACAAAGTCAGAGAAATCCACCAACAATTTAAGGGGAAAAAACTTATTCTTGGTGTTGATGATATGGACATATTCAAAGGTGTCAGTTTAAAACTCTTGGCCATAGAACAACTCCTGCAACAATATCCAGAAATGCAAGGTGAAATAACACTGATCCAAATTTTAAACCCCCCAAGTAGTGCTGACAAAGATGTTGAGAATGCAAAGGAGGAGGCTTACATTACAGCCAAAAAGATAAACGAAAGGTTTGGTTCAGAAAGTTATCAACCTATCATCATCATTGACCGCCATGTTCCTTTCTATGAGAAGGCAGCCTATTATGCTTTGGCCGAATGTTGCATTGTGAATGCAGTTCGGGATGGTTTAAATTTGGTTCCATACAAGTACACTATTTGTAGGCAGGGAAGTTCTAAAGTGGATGAAGCCTTAGAAATTGCTTCTGACTCCCCGCGTACAAGTGCACTTGTTGTTTCTGAGTTTATAGGTTGCTCACCATCTCTTAGTGGGGCAATAAGGGTAAACCCATGGGATATTGATGCAGTAGCCGAAGCACTAAATTTGGCAATCACAATGCCTGATGGAGAGAAGCAGCTTCGACACGAGAAGCACTACAGATACGTTAGTTCACATGATGTGGCCTACTGGGCTCGAAGCTTTGAGCAAGATCTAGTGTTTTCATGCAAGGATCACTATAGGAACCGTTGCTGGGGCATTGGCTTTGGTCTCAACTTCAGAATTTTGTCTCTTTCTCCTAGTTTCAGGAGGCTATCCATAGATCACATTGTCCCTGCATATAAAAGGAGCAGTTGCAGGGCAATCTTTTTGGACTATGATGGCACAGTTGTACCTCAAGCATCCATCGTGAAAGCCCCCAGTCCTGAAGTCATATCCCTGCTAAATAATCTTTGCAGTGATGTTAACAACACTGTGTTTATTGTTAGTGGCAGGGGAAAAACTTCATTGAGTGAATGGTTTGATCAGTGTGAGAATCTTGGTATAGCAGCTGAGCATGGTTATTTTATAAGGTGGGGTAAGCATGCTAGTTGGCAAATGAGTCATGCAGATACAGATTTTGCATGGAAAAGGATTGCTGAACCTGTGATGAAATCTTATATGGAAGCCACAGATGGATCCTCTGTAGAGACCAAAGAGAGTGCCTTGGTATGGCATTACCGTGATGCAGATCCTGATTTTGGATCTTGGCAAGCCATGGAGCTGTTGGATCACCTTGAAAATGTACTTGCAAATGAACCTGTTGCTGTAAAAAAAGGACAACATATTATAGAAGTCAAGCCTCAGGGCATTACAAAAGGGTTAGTTGCACAGGAAGTTCTTTCTACCCTAACAAAAAAGGGTAAATTGCCAGATTTTGTACTGTGCATTGGTGATGATAGGTCTGATGAGGATATGTTTGAGAGCATTTTAACCAGATCTTACAGTGCTACCTCCTCCTCAGCACCAGAAATCTTTGCATGCACTGTTGGACAAAAACCAAGCAAAGCTAGATACTATCTAGATGACACCATGGATGTGATGTCATTACTTAAGGGTCTTGGTGCTGCTTCAGTGCCTAAATCAAGATATTCTACAGAAACCCCTTTTGAGAAAAGAGAAGTATGTTTTGAGAATATCCTATAA 2994 0.4078 MHRSTRSCYFSTYPKVLLVVEIAKKKEIAGTLVFETCFDFLLLSLFSVCCFDQFDAIKGDTFISILEQLGGFISFLNLEKRLRVFLSLIDIYLNGSEEIDTSLAVLYLAVLCLLVHRLHMRDKIIIASLLPLQVTAFLWIDFKIFSGDMLNFPQTPRSLPRVMTDPVIVSHGDGKQSNDDDSGVNSSEHRRKIIIVSNSLPVNGKRDKVSGRWCFSYDEDSIFWQLKDGLSPDADVVYVGSLKVDVDASEQDKVSLQLMEEFNCLPTFIPPELYKQFHDGFCKQHLWPLFHYMLPMYPGNQRFDRSQWQAYVSANKIFADKVMEVLNPEDDYVWVHDYHLMVLPTFLRKRCSRVKLGFFLHSPFPSSEIYKTLPVRGEILKALLNADLVGFHTFDYARHFLSCCRRMLGLEHESKRGYIGLEYSGRTIFIKILPAGIHMGRLQSALEHPSSSDKVREIHQQFKGKKLILGVDDMDIFKGVSLKLLAIEQLLQQYPEMQGEITLIQILNPPSSADKDVENAKEEAYITAKKINERFGSESYQPIIIIDRHVPFYEKAAYYALAECCIVNAVRDGLNLVPYKYTICRQGSSKVDEALEIASDSPRTSALVVSEFIGCSPSLSGAIRVNPWDIDAVAEALNLAITMPDGEKQLRHEKHYRYVSSHDVAYWARSFEQDLVFSCKDHYRNRCWGIGFGLNFRILSLSPSFRRLSIDHIVPAYKRSSCRAIFLDYDGTVVPQASIVKAPSPEVISLLNNLCSDVNNTVFIVSGRGKTSLSEWFDQCENLGIAAEHGYFIRWGKHASWQMSHADTDFAWKRIAEPVMKSYMEATDGSSVETKESALVWHYRDADPDFGSWQAMELLDHLENVLANEPVAVKKGQHIIEVKPQGITKGLVAQEVLSTLTKKGKLPDFVLCIGDDRSDEDMFESILTRSYSATSSSAPEIFACTVGQKPSKARYYLDDTMDVMSLLKGLGAASVPKSRYSTETPFEKREVCFENIL 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01201 997 Pfam Glycosyltransferase family 20 192 675 IPR001830 GO:0003824|GO:0005992
Vimu10g01201 997 NCBIfam HAD-IIB family hydrolase 724 925 IPR006379 -
Vimu10g01201 997 FunFam Trehalose-6-phosphate synthase 2 806 885 - -
Vimu10g01201 997 FunFam Trehalose-6-phosphate synthase 10 853 981 - -
Vimu10g01201 997 NCBIfam trehalose-phosphatase 723 968 IPR003337 GO:0003824|GO:0005992
Vimu10g01201 997 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 160 972 IPR001830 GO:0003824|GO:0005992
Vimu10g01201 997 SUPERFAMILY HAD-like 723 970 IPR036412 -
Vimu10g01201 997 Gene3D - 805 885 - -
Vimu10g01201 997 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 185 443 - -
Vimu10g01201 997 FunFam Alpha,alpha-trehalose-phosphate synthase 445 660 - -
Vimu10g01201 997 Gene3D Glycogen Phosphorylase B; 184 443 - -
Vimu10g01201 997 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 722 839 - -
Vimu10g01201 997 CDD GT20_TPS 192 675 IPR001830 GO:0003824|GO:0005992
Vimu10g01201 997 Pfam Trehalose-phosphatase 726 960 IPR003337 GO:0003824|GO:0005992
Vimu10g01201 997 CDD HAD_TPP 724 964 - -
Vimu10g01201 997 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 192 675 - -
Vimu10g01201 997 Gene3D Glycogen Phosphorylase B; 444 660 - -
Vimu10g01201 997 Gene3D - 725 957 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01201 Vimu-Chr10 11881346 11888858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01201 146 997 Trehalose Biosynthesis Gene Families AT1G23870 65.457 0.0 1206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01201 K16055 - gmx:100812031 1627.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03269 11 52820704 52822953 Vimu10g01201 10 11881346 11888858 ECH
Vimu10g01201 10 11881346 11888858 Vimu10g01201 10 11881346 11888858 ECH
Vimu7g03737 7 32756089 32759259 Vimu10g01201 10 11881346 11888858 PCT