Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01186 ATGTCTTTTTCAGACAATTCTCCGACCGTCTGGTCCATTCAATACACACCGACCGTCCGGTCCATCCAATACAGTGTTGTTGGCATGGCTAGTGAAATATCCCAATGTAATGGATCAAAGAAGTACATTGCGATCATATCTGAGTATTCATTGACATCTTTGGAAAGTGGGATGACAACATCAGGTCTTTTGGCAGTGAAAAGGATTAAGGATTGGGGGATTTCTAAGCAAGATTTTCAAACAAGGATGAATTTGATAGCCCAAGCCAAGCATCCAGGCGTATTGCCACCTGTTGCATACTATTGTTCTCAGCAAGAGAAGCTCCTAGCATATGAATATATGCAGAATGGCAGTCTCTTCATGTTGCTCTATGTTGGATCTGAAAGTGGCGTCATGTTTGACTGGGGAAGAAGACTAAATGTTGCTGCTAAGATAGTTTCGGCTTTGACATATATGCATGAGGAGTTTGTTGATAATGGAATAGCACACGATAACTTAAAGTCAAATAACATTTTGTTTGACAAGAATATGGATCCATGCATAAGCGAATATGGCCTAATGATGGCAGAAAACTATGATGAGTTTGTCATTTCGCATAACAAAGGCATCAAAAGCAAAGATGTAATTGCAGCCACCTTCAAAGCTGATGTATATGCCTTGGGTATGATACTTCTGGAGCTGTTGACAGGGAAAGTGATTAAAAATGATGGATTTGATCTAGTTAAATGGGTGGATTATGTTGGGAATGCAAGTGCAAGTCCAAGTCCCACATTAGATACAAATGAGAAAGTAGAACACTTAAATGAATTTGAGAGGATTTGA 822 0.3942 MSFSDNSPTVWSIQYTPTVRSIQYSVVGMASEISQCNGSKKYIAIISEYSLTSLESGMTTSGLLAVKRIKDWGISKQDFQTRMNLIAQAKHPGVLPPVAYYCSQQEKLLAYEYMQNGSLFMLLYVGSESGVMFDWGRRLNVAAKIVSALTYMHEEFVDNGIAHDNLKSNNILFDKNMDPCISEYGLMMAENYDEFVISHNKGIKSKDVIAATFKADVYALGMILLELLTGKVIKNDGFDLVKWVDYVGNASASPSPTLDTNEKVEHLNEFERI 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01186 273 ProSiteProfiles Protein kinase domain profile. 13 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01186 273 Gene3D Transferase(Phosphotransferase) domain 1 39 271 - -
Vimu10g01186 273 SUPERFAMILY Protein kinase-like (PK-like) 60 248 IPR011009 -
Vimu10g01186 273 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 59 249 IPR046959 -
Vimu10g01186 273 SMART serkin_6 13 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01186 273 Pfam Protein kinase domain 60 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01186 Vimu-Chr10 11663330 11664498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01186 54 247 Receptor kinase-like Gene Family AT1G60630 34.762 5.92e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu10g01186 Pkinase 1.2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01186 - - pvu:PHAVU_009G180700g 344.354