Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01176 ATGAGTGTAAAACTCATCTGGGTATTCTTCAATGCCATCTTTTTGTTTCTTCTAGTGGCTAATTCAGAAGAAGAAGGGACGATCAAGGCCCTGGTGACATTCATGGATAAATTGGCACCAGGGTTTGTACCAACAGACCCTTCGTGGGGTTGGAACCTTTCATCAGATCCCTGCATTGATAAGTGGTACGGTGTGAAGTGCCATTCAGATAACAAATATGTTATGAGTGTGACTCTTGAGAAGTTCAATTTTGGAGGAGGTTTTGACGCCGGTTCTCTTTGCATTACAAAGTCTCTTCAAATGCTTAGCCTGAAGGACAACAGTTTACATGATTCGATACCAGAGGATATAGGAAACTGCAAGTCATTGACTCACTTGTTTTTAAGTGGGAACCAATTCTCTGGTGACCTTCCTATTTCTATTGGCAATCTAAGTAACATAATACGGCTTCATATTTCGGACAACCACTTAACTGGAGAGCTACCTAAAATGGTTCATGTTTCAAGTTTGATATCCTTCGTTGCTCAAAACAACAACTTCACTGGGGAGATTCCTAGTTTTGACTTCTCCAACCTTGAAGAGTTTAATGTCTCTAATAACAATTTACATGGTCCAGTTCCTGATGTCGGAGGTAAATTCCATGAAGACAGCTTTACTGGGAATCCTAACTTATGTGGGGAGCCACTTTCAAATGCATGTCCTCCTCCTCCTCCTCCTTCTCCTTCTCCTTCTCCTTCACCATCACCACCACCACATGAAAAGGACAAAAAGTCGTTCCCTAATGATTTGTTCATTTATTCGGGTTACTTAGTCCTTGGTTTGATTACGCTTATTTTCTTGACCTTTAAACTATTATGCAAGTTCAAGACCAAAGAAAAAGTGTTGGATGTTGAAAAGAAGGAAAAGGCAGAAGAAAGTGTTGGTGTTGTTGGCATGGCTGGTGAAATATCCCAATCCAATGGATCAAAGAAGTACATTGGGATCAGATCCGAGTATTCATTGACATCTTTGGAAAGTGGGATGACAACATCAGGTCTTGTTCTTCTTTCAAGTCGAACCCTTAGAGGGTTGCAATTTGAGGACTTGCTTGGTGCTCCTGCCGAATTGATTAGAAGGGGAAAGCACGGAAGCCTCTACAAGGTTATGCTCGATAATGGGGTGCAGTTGGCAGTGAAGAGGATTAAGGATTGGGGGATTTCTAAGCAAGATTTTCAGACAAGGATGAATTTGATAGCCCAAGCCAAGCATCCACGCGTATTGCCACCTGTTGCATACTATTGTTCTCAGCAAGAGAAGCTCCTAGCATATGAATATATGCAGAATGGTAGTCTCTTCATGTTGCTCTATGCTGGATCTGAAAGTGGCCTCATGTTTGACTGGGGAAGAAGACTAAATGTTGCTGCTAAGATAGTTTCGGCTTTGACATATATGCATGAGGAGTTTGTTGATAATGGAATAGCACACGGTAACTTAAAGTCAAATAACATTTTGTTTGACAAGAATATGGATCCATGCATAAGCGAATATGGCCTAATGATGGCAGAAAACTATGGTGAGTTTGTCATTTCGCATAACAAAGGCATCAAAAGCAAAGATCTAATTGCAGCCACCTTCAAAGCTGATGTATATGCCTTGGGTATGATACTTCTGGAGCTGTTGACAGGGAAAGTGATTAAAAATGATGGTTTTGATCTAGTTAAATGGGTGAATTCAGTGGTCAGAGAGGAATGGAGCATTGAAGTTTTTGACAAGTCCCTAATCTCACAGGGTGCTTCGGAAGAGCGGATGATGAATCTGTTGCAGGTAGCATTAAAATGCTTAAATCCTTCTCCACATGACAGGCCAAGTATGAGCCAAGTTGCAGTGATGACAAATGCTTTGATAGAGGAGGAAGAAAAATCCATATCCTTTGACACATGA 1920 0.4109 MSVKLIWVFFNAIFLFLLVANSEEEGTIKALVTFMDKLAPGFVPTDPSWGWNLSSDPCIDKWYGVKCHSDNKYVMSVTLEKFNFGGGFDAGSLCITKSLQMLSLKDNSLHDSIPEDIGNCKSLTHLFLSGNQFSGDLPISIGNLSNIIRLHISDNHLTGELPKMVHVSSLISFVAQNNNFTGEIPSFDFSNLEEFNVSNNNLHGPVPDVGGKFHEDSFTGNPNLCGEPLSNACPPPPPPSPSPSPSPSPPPHEKDKKSFPNDLFIYSGYLVLGLITLIFLTFKLLCKFKTKEKVLDVEKKEKAEESVGVVGMAGEISQSNGSKKYIGIRSEYSLTSLESGMTTSGLVLLSSRTLRGLQFEDLLGAPAELIRRGKHGSLYKVMLDNGVQLAVKRIKDWGISKQDFQTRMNLIAQAKHPRVLPPVAYYCSQQEKLLAYEYMQNGSLFMLLYAGSESGLMFDWGRRLNVAAKIVSALTYMHEEFVDNGIAHGNLKSNNILFDKNMDPCISEYGLMMAENYGEFVISHNKGIKSKDLIAATFKADVYALGMILLELLTGKVIKNDGFDLVKWVNSVVREEWSIEVFDKSLISQGASEERMMNLLQVALKCLNPSPHDRPSMSQVAVMTNALIEEEEKSISFDT 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01176 639 PANTHER OS05G0588300 PROTEIN 8 627 - -
Vimu10g01176 639 Gene3D Ribonuclease Inhibitor 28 188 IPR032675 -
Vimu10g01176 639 MobiDBLite consensus disorder prediction 224 256 - -
Vimu10g01176 639 SUPERFAMILY Protein kinase-like (PK-like) 368 622 IPR011009 -
Vimu10g01176 639 Pfam Protein kinase domain 370 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01176 639 Gene3D Transferase(Phosphotransferase) domain 1 439 638 - -
Vimu10g01176 639 SUPERFAMILY L domain-like 44 227 - -
Vimu10g01176 639 FunFam Leucine-rich repeat receptor protein kinase EMS1 91 186 - -
Vimu10g01176 639 Gene3D Ribonuclease Inhibitor 189 236 IPR032675 -
Vimu10g01176 639 ProSiteProfiles Protein kinase domain profile. 364 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01176 639 Gene3D Phosphorylase Kinase; domain 1 353 438 - -
Vimu10g01176 639 MobiDBLite consensus disorder prediction 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01176 Vimu-Chr10 11522881 11525021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01176 48 620 Receptor kinase-like Gene Family AT1G48480 33.389 1.55e-93 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu10g01176 Pkinase 1.9e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01176 - - pvu:PHAVU_009G180700g 1028.08