Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01174 ATGGACCAGTCAATGCTGTCTCATTCTCCACACGTCGCCTCACCATCCTGTGACGTTATCATTCTCCCTGCCCGCACTGCCCGTTCTGCCCGACCCCTATTAGATTCTCGCATTTTCCCCCTTCCCACATCCAAAGGCGGCTACCAATTCCTTCCTTCCTTCTCTCCATCGATTGTTCCTCTTTCGCATTTTTCTTCGGCTGGATCCGATTCTCCCAATTCCAATCTCCAGAACTCAGTCCTTGTTAGGGTTTCGCGGAAGCATGGTGGTAGAGTTAGGGTTTTGCACGGATCTAGGGTTTCGGTTGTTCTGAGGACTTCGGGTGTGGAATTTGGAGGGGGTTTGATGGCTATGCATGGACGTGGAGGTGAGAAGGGCACTCGGCACATGTGGAAAGCCCCCACACTTGGCAACTCGTCTCTGAACGTCGATGTTTCTTCGTCTTCTTCTTCATCGTCAGTGAAGTCGTTCTTTAAGTTGGGAGGAATGGTTGATGTGGCAAGGCTGGATTTGGGAGGCTGGCTGTGTGTGGGAGTATATAAAGATTTTATAGATTTAGATACAGGTACAAGCAGTGACCGTCGCAAAATTAGTGTTGGTGAATGTGCTCTCTTCAAACCTTCTGAAGATCGCCCACCATATATTGGTATAATTCGTTATCTGACAATTGGCAAAGATAAAAAATTGAAGTTTGGTGTTAGTTGGCTCTATCGATCTATTGAAGTAAAACTCAGCAAGAGTGTGCCTTTGGAGGCTGCTCCAAACGAAATCTTCTACACCTTCCATAAGGATGAGATTGATGCTGAAGCTCTGCTCCATCCTTGTAAAGTTGCATTTCTTCCTAAGGGGGCAGAACTTCAACCAGGGATTTCTTCATTTTTGTGCAGGAGGGTTTATGACATTGCAAACAAGTGTTTATGGTGGTTAAATGATCAAGATTATATTAATGATTGTCAAGAAGAAGTAGATAAACTATTATACAGGAATTGTGTAGAAATGCATGCAACAGTGCAGCCAGGTGGCCGTTCTCCTAAGCCTATGAGTAGTCCAACTTCAACATCTCAGTTAAAATCTGCTTCAGATAGTGTCCAGAATAGTACTTCTTCCTTTCCATCTCACATTAAGGGGAGGAAAAGGGAAAGGGCAGATCAAGGCTCTGAGTCAGCCAAGCGAGAACGATCAATAAAAACTGAGGATGGGGATTCTGGTAATTTCAAGCATGATAACATTTTCAAGACAGAGATTGCAAAAATTACTGAGAAGGGAGGGCTTGTTGATGGTGAAGGAGTTGAAAAATTAGTGCAGCTGATGGTTCCTGATAGAAATGAGAAGAAGATAGATTTAGCTAGCCGGTCATTGCTTGCAGCTGTCGTTGCAGCAACAGATAAGTTAGATTGTCTTAGTCAGTTTGTGCAGCAAAGGGGTTTGCCTGTATTTGATGAATGGCTCCAAGAGGTCCATAAAGGGAAGATTGGTGATGGTGATAAATCTGCTGAGGAATTTCTCTTGGTATTGCTACGGGCACTTGATAAACTTCCAGTAAATCTTCAGGCTTTACAAACATGCAACATTGGAAAATCTGTGAATCATTTGCGAAGTCACAAAAACGCTGAAATTCAGAGGAAAGCAAGAGGTTTAGTTGATACATGGAAGAAACGCGTTGAAGCTGAAATGAATATAAATGATGCAAAGTCTGGTTCAGGTACCAATGTCCACTGGCCTGCCAAATCACGTCCTTCTGATGTTGGTCAAGGTGGGAATAGACATTCAGGTGCATCATCAGATGTTGCCATGAAGAGTTCAGTTACCCAGCTTTCTGCTTCGAAGACCACCTCTGTGAAGATTGTCCAGGGAGAGAATATTACTAGATCTGCATCAACATCTGCATTTCCAGGGCCTGCAAAATCAGTGCCGTCACCTGCAGCTGTGACTGCAAATTTAAAAGATGGGCAGCCTCGTATAGTTGCTGTAAATGGAGGTTCTGATCCTCCCATGGCAAATGCAAGGGATGAGAAAAGTTGTAGTTCTAGTCAATCTCACAACAACAGTCAATCTTGTTCTAGTGAGCATGCTAAAACTGGAGGTCACTCAGTAAAGGAAGATGCCCGAAGCTCTACTGCAATGAGTGTGAATAAGATTTCTGGAGGCTCTTCACGTCATCGAAAATCCATTAATGGATTTTCAGGTTCATCTCCATCTGGAGGGCAAAGGGAAACCGGATCAAGCAGGAATTCCTCCTTGCACAAAAATTTAACTTCAGAAAAAATATCTCAACCTGGATTAATGGATAAAGCAGTTGATGGAACTTCTCTTGAGGGCAATATTCCAAAGCTGGTTGTTAAAATTCCAAATCAAGGTAGAAGTCCTGCACAAAGTGTCAGTGCTGGTTCTTTTGATGATCCTACGATCATGAATAGTCGAGCTTCATCTCCTGTTCTTCCCGAGAAGCATGATCAGTCTGATCACAGCCCAAAGGAAAAGAGTGACCTTTATCGTGTAAATATTGGTTCAGATATTAATACTGAATCTTGGCAGAGTAATGACTTTAAAGAGGTATTGACTGGCTCTGATGAGGGTGATGGATCACCTGCTGCAGTTACTGATGAAGAGCACTGTCGGACCGGCAATGCTTGTAAGAAGGCATTGGAAATATCAAAAGCTGCTTCATCATCATCTGGAAACGAAAATAAAGCTGGCAATTTGCAGGATGCTTCTTACAGCTCAATAAATGCTTTAATTGAAGGTGTTAAGTACTCTGAAGCTGATGATGGTGGAATGAATCTTCTTGCTAGTGTGGCTGCTGGAGAGATATTGAAATCTGAATTGTTAACTCCAACTGGATCTCCAGAAAGAAACACAGCTGCTGTTGAACAGTCATGCACAGACAATGGTGTTAAGTCCTCTGAAGAAAATCTTGTTCGTGATGAATGTCACTCAAATAATGGTCTTGATGTCGAACATAAGAATCTGGCCTCTGTAACAGGTGATCTAGGGGCAAATGGTGAAAGCGATTCTGATTTTCAAGCTTCAGGAGGGAAATCTGCAAGAGTGCTAAATAAGCGTGTTGATGCATGTAGTATGGATTTACAACAGGTTGCTGAAACTACTTTGGAAAGCAAAGGAAAATTAAATGAAAAATCTGGACCTACTTCACTGGGTGGACTTGCTGAAAATTCTGTACAAGAAGCTGGAGACGGTGATGGAAGCAAGCAGCTACAGGAGGTTGTTCAGGGAGTCAATGCTGGCGAAATTCATGATAAAATCAGTTGTGTTGCTGAAGTTGAGGCAGAAGCAGCTAAAAAATTGTCACATACAGCTGCGGAAGTGGATGTACAGAGTGATAACTATACTGCTGAAGGATCAAGTGGCAGTGGACAGACAGTTAAAAAGCCTCCTGCTGTACTTGTTCAGTCTGATTTGGCAAGAGGAAAAGATGATAAAGCACTCCATTCTTCTGGTTATAGTGTTGACAAGGTTCTTAAAGACTTCCCTGAACGGGAATCTGACAAAACTGATGATATTGATGCTGAGAATCATGTCAACCAGTCTAGAAGTAAAAGAAATGAGTCTGAAAGTGATACCTTGACCATGCCTGAGAATAGAGGTACATGTTCTATTGTGACTGGGCTTGTTGCTGAACATGTAGAGGAGAATTTAGAAACGAGAGATGTTCGTGACCAACCTTCTAGAGAGGATCTTCCTGAAGATTCACCTAGTGTTCTTTCACAAGAAATTGATAAGCATCTCAATTCTAAAAGGTTGAAGTTGACTTCCTCAGAAGCAGAGGAGGCTGAGGAGTGCACCTCTACCACTGCAGATGCTTCTTCGATGTCTGCTGCAGCTGTGTCAGATGCGGATGCAAAGGTTGAATTTGATTTAAATGAAGGGCTCAATGCAGATGATGGAAGATGTGAGTTCAACAGCATTGCCAATTCAGGATGTGCACCTTCTGGTCGATTGATCAGTCCTGTTCCATTTCCTGCTTCATCTATGTCTTGTGGTATTCTTGCCCCAGTCACCGTGGCGTCTGCTGCTAAGGGGCACTTTGTGCCTCCCGAAGATTTATTGAGAAGTAAAGGTGAAATTGGTTGGAAGGGATCAGCTGCCACCAGTGCATTCAGGCCAGCTGAACCCAGGAAAGTTATGGAAGTGTCTCTTGGTACATCAGTTACCCCTATTCCTGATGCTCCAGCTGGAAAGCAGAGTCGAGCACCATTGGATATTGACTTGAATGTGGCCGATGAAAGAATACTTGATGACATTTCTTGTGCTCGACACACAAATTCTATATCTCTTGCAACTGATAGTCATTATCCTGTATGCAGTAAAATACCTTCACCTGTTCGCAGCTCTGGAGGGCTTGGTCTTGACTTAAACCAAGTGGGTGATGCTTCCGACATGGGCATTTGCTTGAACAGTAATCATAAAATTGACGTGCCAATTATGCAGGGGAAATCATCATTGGGTGGTCCACCAATTAGAGAAGTGAATGTCCACAGGGACTTTGATTTGAACAACGGACCTTCTGTGGATGAAATCACCACCGAATCCTCATTGTTCTCTCATCACTCCAGGAGCAATGTGCCTTCTCAATTACCTGTTTCTGGACTTAGAATGACTACTGCTGAGCCAGGCAACTTCTCTTGGCTTCCTTCCAGTGGCAACACCTATTCTGCTGTCACAATATCTTCAATTATGCCTGATAGAGGGGATCAGCCCTTTTCAATTGTTGCTCCAAATGGGCCACAAAGGTTGTTGACTCCCGCTGCTGGTGGCAACCCATTTGGACCTGATATTTATAGGGCCCCAGTATTGTCATCTTCTCCTGCAGTGTCATATCCATCTGCTCCATTTGAGTATCCCGTCTTCCCTTTTAACTCCAGCTTCCCTCTTCCATCAGCTTCTTTTTCTGCTGGGTCAACTACTTATGTATATCCAACATCAGCCAATCGGCTTTGCTTCCCTGCGGTAAATTCACAGTTAATGGGGCCTGCCGGCACAGTTTCATCTCATTACCCCAGGCCCTATGTTGTTGGTCTTACAGAAGGTAACAATAGTGGTAGTGCTGAGACCAGTAGAAAATGGACAAGGCAGGGTTTAGATCTTAATGCTGGACCTGGCTGTTCAGACATGGAGGGGAGAGATGAGAGTTCGCCTCTTCCATCTAGGCAACTTTCTGTTGCTAGTTCACCGGCGGCCTTAGCTGAGGAGCAAGCAAGGATCCAGCTTGCCAGTAGTGTTCGGAAGAGGAAGGAGCCTGATGCTGGGTGGGATGGCTACAACCAATCCTCATGGCAATAG 5301 0.4397 MDQSMLSHSPHVASPSCDVIILPARTARSARPLLDSRIFPLPTSKGGYQFLPSFSPSIVPLSHFSSAGSDSPNSNLQNSVLVRVSRKHGGRVRVLHGSRVSVVLRTSGVEFGGGLMAMHGRGGEKGTRHMWKAPTLGNSSLNVDVSSSSSSSSVKSFFKLGGMVDVARLDLGGWLCVGVYKDFIDLDTGTSSDRRKISVGECALFKPSEDRPPYIGIIRYLTIGKDKKLKFGVSWLYRSIEVKLSKSVPLEAAPNEIFYTFHKDEIDAEALLHPCKVAFLPKGAELQPGISSFLCRRVYDIANKCLWWLNDQDYINDCQEEVDKLLYRNCVEMHATVQPGGRSPKPMSSPTSTSQLKSASDSVQNSTSSFPSHIKGRKRERADQGSESAKRERSIKTEDGDSGNFKHDNIFKTEIAKITEKGGLVDGEGVEKLVQLMVPDRNEKKIDLASRSLLAAVVAATDKLDCLSQFVQQRGLPVFDEWLQEVHKGKIGDGDKSAEEFLLVLLRALDKLPVNLQALQTCNIGKSVNHLRSHKNAEIQRKARGLVDTWKKRVEAEMNINDAKSGSGTNVHWPAKSRPSDVGQGGNRHSGASSDVAMKSSVTQLSASKTTSVKIVQGENITRSASTSAFPGPAKSVPSPAAVTANLKDGQPRIVAVNGGSDPPMANARDEKSCSSSQSHNNSQSCSSEHAKTGGHSVKEDARSSTAMSVNKISGGSSRHRKSINGFSGSSPSGGQRETGSSRNSSLHKNLTSEKISQPGLMDKAVDGTSLEGNIPKLVVKIPNQGRSPAQSVSAGSFDDPTIMNSRASSPVLPEKHDQSDHSPKEKSDLYRVNIGSDINTESWQSNDFKEVLTGSDEGDGSPAAVTDEEHCRTGNACKKALEISKAASSSSGNENKAGNLQDASYSSINALIEGVKYSEADDGGMNLLASVAAGEILKSELLTPTGSPERNTAAVEQSCTDNGVKSSEENLVRDECHSNNGLDVEHKNLASVTGDLGANGESDSDFQASGGKSARVLNKRVDACSMDLQQVAETTLESKGKLNEKSGPTSLGGLAENSVQEAGDGDGSKQLQEVVQGVNAGEIHDKISCVAEVEAEAAKKLSHTAAEVDVQSDNYTAEGSSGSGQTVKKPPAVLVQSDLARGKDDKALHSSGYSVDKVLKDFPERESDKTDDIDAENHVNQSRSKRNESESDTLTMPENRGTCSIVTGLVAEHVEENLETRDVRDQPSREDLPEDSPSVLSQEIDKHLNSKRLKLTSSEAEEAEECTSTTADASSMSAAAVSDADAKVEFDLNEGLNADDGRCEFNSIANSGCAPSGRLISPVPFPASSMSCGILAPVTVASAAKGHFVPPEDLLRSKGEIGWKGSAATSAFRPAEPRKVMEVSLGTSVTPIPDAPAGKQSRAPLDIDLNVADERILDDISCARHTNSISLATDSHYPVCSKIPSPVRSSGGLGLDLNQVGDASDMGICLNSNHKIDVPIMQGKSSLGGPPIREVNVHRDFDLNNGPSVDEITTESSLFSHHSRSNVPSQLPVSGLRMTTAEPGNFSWLPSSGNTYSAVTISSIMPDRGDQPFSIVAPNGPQRLLTPAAGGNPFGPDIYRAPVLSSSPAVSYPSAPFEYPVFPFNSSFPLPSASFSAGSTTYVYPTSANRLCFPAVNSQLMGPAGTVSSHYPRPYVVGLTEGNNSGSAETSRKWTRQGLDLNAGPGCSDMEGRDESSPLPSRQLSVASSPAALAEEQARIQLASSVRKRKEPDAGWDGYNQSSWQ 1766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01174 1766 MobiDBLite consensus disorder prediction 670 692 - -
Vimu10g01174 1766 MobiDBLite consensus disorder prediction 373 403 - -
Vimu10g01174 1766 MobiDBLite consensus disorder prediction 943 967 - -
Vimu10g01174 1766 MobiDBLite consensus disorder prediction 1113 1128 - -
Vimu10g01174 1766 MobiDBLite consensus disorder prediction 1683 1698 - -
Vimu10g01174 1766 MobiDBLite consensus disorder prediction 814 830 - -
Vimu10g01174 1766 MobiDBLite consensus disorder prediction 337 403 - -
Vimu10g01174 1766 Gene3D - 190 420 IPR043151 -
Vimu10g01174 1766 MobiDBLite consensus disorder prediction 852 871 - -
Vimu10g01174 1766 MobiDBLite consensus disorder prediction 646 768 - -
Vimu10g01174 1766 MobiDBLite consensus disorder prediction 560 595 - -
Vimu10g01174 1766 Pfam TFIIS helical bundle-like domain 505 554 IPR017923 -
Vimu10g01174 1766 MobiDBLite consensus disorder prediction 1160 1202 - -
Vimu10g01174 1766 Pfam BAH domain 196 303 IPR001025 GO:0003682
Vimu10g01174 1766 MobiDBLite consensus disorder prediction 1683 1766 - -
Vimu10g01174 1766 MobiDBLite consensus disorder prediction 1160 1194 - -
Vimu10g01174 1766 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 118 1766 - -
Vimu10g01174 1766 MobiDBLite consensus disorder prediction 1218 1233 - -
Vimu10g01174 1766 SMART BAH_4 195 310 IPR001025 GO:0003682
Vimu10g01174 1766 MobiDBLite consensus disorder prediction 782 830 - -
Vimu10g01174 1766 MobiDBLite consensus disorder prediction 700 757 - -
Vimu10g01174 1766 MobiDBLite consensus disorder prediction 342 372 - -
Vimu10g01174 1766 MobiDBLite consensus disorder prediction 1036 1057 - -
Vimu10g01174 1766 MobiDBLite consensus disorder prediction 785 813 - -
Vimu10g01174 1766 CDD TFIIS_I 490 555 - -
Vimu10g01174 1766 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 465 567 IPR035441 -
Vimu10g01174 1766 MobiDBLite consensus disorder prediction 1036 1069 - -
Vimu10g01174 1766 MobiDBLite consensus disorder prediction 1113 1132 - -
Vimu10g01174 1766 MobiDBLite consensus disorder prediction 1218 1244 - -
Vimu10g01174 1766 MobiDBLite consensus disorder prediction 945 967 - -
Vimu10g01174 1766 ProSiteProfiles BAH domain profile. 195 310 IPR001025 GO:0003682
Vimu10g01174 1766 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 429 558 IPR035441 -
Vimu10g01174 1766 ProSiteProfiles TFIIS N-terminal domain profile. 477 557 IPR017923 -
Vimu10g01174 1766 SMART TFS2_5 483 556 IPR003617 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01174 Vimu-Chr10 11475038 11482154 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vimu10g01174 BAH 5.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01174 - - gmx:100788512 2541.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01022 8 17388250 17396470 Vimu10g01174 10 11475038 11482154 ECH
Vimu10g01174 10 11475038 11482154 Vimu10g01174 10 11475038 11482154 ECH