Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01168 ATGGCATCATTTGCAGGGACTACCCAGAAGTGCAAAGCATGTGAGAAGACAGTGTATTTGGTGGATCAGCTCACTGCTGACAACAAGATCTATCACAAATCCTGTTTCAGATGCTACCACTGCAAGGGTACCCTCAAGCTGAGTAACTATTGTTCCTTTGAGGGCGTTTTATACTGTAAGCCTCATTTTGATCAACTCTTTAAGAAGACTGGTAGCTTGGACAAAAGTTTTGAAGGTATTCCAAGAACTGCTAGACTTGAAAGATCTGCTGATCAGGTCCAAACCAATAGCAAGGTTTCAAATTTATTTGCTGGAACTCAGGAAAAATGTGTTGCTTGCAAGAAAACAGTGTACCCAATTGAAAAGGTAGCTGTTGATGGAACATCTTACCATAAGGCTTGTTTCAGGTGCACTCATGGAGGATGTGTAATTAGCCCATCAAATTATGTTGCCCATGAACACCGTCTTTATTGTAGGCACCATCACACTCAGTTGTTCAAGCAGAAAGGTAACTTTAGCCAACTCGACAAGCAAGAAAATGGTGAAGGGGTGACTGAGAACACAACAACAGAGTAG 576 0.4184 MASFAGTTQKCKACEKTVYLVDQLTADNKIYHKSCFRCYHCKGTLKLSNYCSFEGVLYCKPHFDQLFKKTGSLDKSFEGIPRTARLERSADQVQTNSKVSNLFAGTQEKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLDKQENGEGVTENTTTE 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01168 191 CDD LIM1_SF3 7 69 - -
Vimu10g01168 191 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Vimu10g01168 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Vimu10g01168 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Vimu10g01168 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 174 - -
Vimu10g01168 191 Pfam LIM domain 110 165 IPR001781 -
Vimu10g01168 191 Pfam LIM domain 11 65 IPR001781 -
Vimu10g01168 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Vimu10g01168 191 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Vimu10g01168 191 FunFam LIM domain and actin-binding 1 104 174 - -
Vimu10g01168 191 SMART lim_4 10 62 IPR001781 -
Vimu10g01168 191 SMART lim_4 109 161 IPR001781 -
Vimu10g01168 191 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Vimu10g01168 191 CDD LIM2_SF3 110 170 - -
Vimu10g01168 191 Gene3D Cysteine Rich Protein 104 174 - -
Vimu10g01168 191 Gene3D Cysteine Rich Protein 5 75 - -
Vimu10g01168 191 PANTHER OS06G0237300 PROTEIN 2 94 - -
Vimu10g01168 191 FunFam LIM domain and actin-binding 1 5 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01168 Vimu-Chr10 11354942 11357471 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vimu10g01168 LIM 2.4e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01168 K09377 - gmx:100500444 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01168 10 11354942 11357471 Vimu10g01168 10 11354942 11357471 ECH
Vimu7g00704 7 7045032 7047745 Vimu10g01168 10 11354942 11357471 PCT