Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01164 ATGGGTGGCAATGGGAAGCACAGATGGAAAATCTCCTTCCACCGCTCCTCTTCTCAATCCTCTAAGCTCCCTCCCAAGGAATTTACGTGCCCCATTTCCGGCTCCTTAATGTCCGACCCGGTTGTTGTCGCTTCGGGTCAAACCTTCGACCGTCTCGCCGTTCAAGTCTGTAAGGACCTCAACTTCTCCCCCAAACAAGAAGACGGCACCCGACCCGATTTCTCAACGGTAATCCCTAACTTAGCCCTCAAAACCACAATCCTCAATTGGTGCGATAAATCCCGCACCCAACACCCGAGCGCACCCGATTACGCCTCCCTCGAGGGCCGCGTCAGGCAAGCAATGGTTCTTTCAGTGGAACAAAGCCAACACGAAGAACGTGAAGAACGAATTAGGGTTTCCGAAAAGGAGCTTCTCAACGCCGTCCCTGATAACCCTCCCGTCATTTTCTCCCACGCCGCCACTGAGTTAAGCCCCCGAGTCAACCACTTCAACTCGGGATCCTCCTCAGAGGAATCGGTCATCATTCTGCCCAGTCCGGGAACGCCGTTACCGTTTACTGTTCGTCCAACCTGCTTCTCCTCCTCCTCCTCCTGCGAGATTGAAATTGAAAACCCTGGCGCGCCGGTTTCGGAGGAAGAGGAAAGAATATTGAAGAAATTGAAGAGCAGCGAGGTGTTTGAGCAAGAGGAAGGCGTAATCGCGCTGAGGAAGATCACGAGGAGCAAAGTGGAGGCTAGGCTCTTGCTCTGCACGCCGCGGGTGCTGCTGGCGCTGCGCGGTTTGATCGCTTCGCGGTACGGCGTTGTTCAGGTCAACGCGGTGGCGTCTCTGGTCAACCTCTCGCTGGAGAAGCAGAACAAGGTGAAGATAGTGAGGTCGGGCTTTGTACCGTTTTTAATCGATGTTTTGAAGGGGGGATTGGATGAGTCGCAGGAGCACGCTGCGGGCGCGCTTTTCAGTTTAGCCTTGGATGATGATAATAAAATGGCCATTGGCGTTCTCGGCGCGTTGCAGCCGCTGATACACTCGCTGCGTGCCGAGTCCGATAGGACTCGGCATGACTCGGCGCTCGCGTTGTATCATCTGAGTCTGGTTCAGAGTAACCGAGTGAAGCTGGTGAAACTCGGGGTGGTACCGACGCTTTTGTCCATGGTGGTGGCGGGGAACTTGGCGAGCCGAGTGCTGCTGATTCTGTGCAACCTGGCGGTGTGCACGGAGGGGCGCACGGCGATGCTGGACGCGAACGCGGTGGAGTGTCTGGTGGGGCTGTTGAGGACGAACGAGTTGGACTCAGAGGCGACTCGGGAGAATTGCGTGGCAGCGCTATTCGCGCTAAGTCATAGGAGCTTGAGGTTCAAAGGGTTGGCGAAGGACGCGAGGGTTGTGGAGGTTTTGAAGGAGGTTGAAAACTCGGGAACAGAGAGGGCCAGGGAGAAGGCCAGGAAGGTGTTGCACATGTTGAGAACTGTGGGCGATGGAGGCGATGATGAAGGTGACGAATTTTACGACTCGGTCGGGTTGACGCGGAACCGTTATCGAATTGGTGCTGGCAGGAATCACAACATCCTCAACACGACCACGTTTTAG 1590 0.5553 MGGNGKHRWKISFHRSSSQSSKLPPKEFTCPISGSLMSDPVVVASGQTFDRLAVQVCKDLNFSPKQEDGTRPDFSTVIPNLALKTTILNWCDKSRTQHPSAPDYASLEGRVRQAMVLSVEQSQHEEREERIRVSEKELLNAVPDNPPVIFSHAATELSPRVNHFNSGSSSEESVIILPSPGTPLPFTVRPTCFSSSSSCEIEIENPGAPVSEEEERILKKLKSSEVFEQEEGVIALRKITRSKVEARLLLCTPRVLLALRGLIASRYGVVQVNAVASLVNLSLEKQNKVKIVRSGFVPFLIDVLKGGLDESQEHAAGALFSLALDDDNKMAIGVLGALQPLIHSLRAESDRTRHDSALALYHLSLVQSNRVKLVKLGVVPTLLSMVVAGNLASRVLLILCNLAVCTEGRTAMLDANAVECLVGLLRTNELDSEATRENCVAALFALSHRSLRFKGLAKDARVVEVLKEVENSGTERAREKARKVLHMLRTVGDGGDDEGDEFYDSVGLTRNRYRIGAGRNHNILNTTTF 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01164 529 PANTHER U BOX DOMAIN-CONTAINING 20 488 - -
Vimu10g01164 529 SUPERFAMILY ARM repeat 216 488 IPR016024 -
Vimu10g01164 529 MobiDBLite consensus disorder prediction 1 26 - -
Vimu10g01164 529 ProSiteProfiles U-box domain profile. 23 97 IPR003613 GO:0004842|GO:0016567
Vimu10g01164 529 FunFam RING-type E3 ubiquitin transferase 212 488 - -
Vimu10g01164 529 Pfam U-box domain 25 94 IPR003613 GO:0004842|GO:0016567
Vimu10g01164 529 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 103 IPR013083 -
Vimu10g01164 529 SMART arm_5 284 324 IPR000225 GO:0005515
Vimu10g01164 529 SMART arm_5 325 365 IPR000225 GO:0005515
Vimu10g01164 529 SMART arm_5 405 448 IPR000225 GO:0005515
Vimu10g01164 529 SMART Ubox_2 27 90 IPR003613 GO:0004842|GO:0016567
Vimu10g01164 529 SUPERFAMILY RING/U-box 14 98 - -
Vimu10g01164 529 FunFam RING-type E3 ubiquitin transferase 7 98 - -
Vimu10g01164 529 Gene3D - 212 495 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01164 Vimu-Chr10 11284193 11288261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01164 1 520 U-box Gene Family AT5G65200 56.835 0.0 567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01164 - - gmx:100784564 857.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01011 8 17259804 17263189 Vimu10g01164 10 11284193 11288261 ECH
Vimu10g01164 10 11284193 11288261 Vimu10g01164 10 11284193 11288261 ECH