Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01154 ATGGCCATCTCAGTACCCAGTAGGCAACTATTCATTGATGGAGAGTGGAAAGTCCCCGTCCACAACAACCGGATTCCGATCATCAATCCCGCCACCGAAGACATCATAGGCGATATCCCTGCTGGTACCAAGGAAGATATTGACCTTGCTGTCGATGCTGCTAAAAGAGCCTTGTCCCGGAACAAAGGCAGAGATTGGTCATCAGCTTCTGGTTCTGTTCGTGCTGGTTATCTTCGAGCCATCGCTTCAAAGATAACGGAGAAAAAGGATGAACTGGGAAAGCTTGAAGCAATTGATAGTGGAAAACCACTAGATGAAGCACTGGCAGACCTGGATGATGTTATTGCTTGTTTTAACTACTATGCTGAGCTTGCAGAAGGGTTGGATGCAAAGCAAAAGGCTCCTGTATCCCTCCCTATGGAAACTTTCAAGAGTTATATTCTCAAGGAGCCCATTGGGGTTGTTGCATTAATTACTCCATGGAACTATCCTCTCTTAATGGCTACATGGAAAGTTGCTCCTGCTCTGGCTGCTGGTTGTGCTGCAATATTGAAGCCATCTGAATTGGCATCTGTGACATGTTTGGAGCTGGCTGAAGTATGCAGAGAAGTGAACCTTCCTCCAGGGGTATTAAATGTTGTTACTGGATTAGGCAATGATGCTGGTGCTCCTTTGGCATCTCATCCTGATGTAGACAAGGTTGCCTTTACTGGAAGCTCTTTAACTGGGAGCAAGATTATGTCAGCTGCAGCACAGCTAACCAAGCCTGTTTCTCTAGAGCTTGGTGGAAAAAGCCCAATCATTGTTTTTGAGGATGTTGACCTTGACAAGACTGCTGAATGGACAATCTTTGGCTGCTTCTTTACAAATGGTCAGATTTGCAGTGCAACATCTCGCCTTATCGTGCATGAAAGTATAGCAACAGAATTTGTGGATAAACTTGTGAAATGGGCCAAAAACATCAAAATTTCAGATCCCTTGGAAGAAGGCTGCAGGCTAGGTCCTATCGTTAGTGAAGGACAGTACAAAAAGGTATTGAGTTTCATCTCAACCGCTAAGAGTGAAGGTGCAACAATTTTGACAGGAGGATCTCGTCCAGAGCATTTGAAAAGGGGATACTTTGTTGAACCCACCATCATCAGTGATGTGACTACCTCAATGCAAATTTGGAGAGAAGAAGTTTTTGGACCTGTACTCTCAGTGAAAACATTCAGTACCGAGGAAGAAGCTATTGAACTAGCAAATGACACCCAATACGGCTTAGGGTCTGCCGTAATGTCAAAAGATCTAGAAAGATGTGAGCGTATATCTCAGGCTATTAAAGCTGGAATAGTATGGATAAATTGTGCTCAACCAAGCTTCATTCAAGCCCCATGGGGAGGCATAAAACGTAGTGGCTTTGGTCGTGAATTAGGAGAATGGGGTCTAGAGAACTATTTAAGTGTGAAGCAAGTGACCAAGTACATATCTGATGAACAGTGGGGCTGGTATCAGCCTCCTTCAAAGCTCTGA 1512 0.4438 MAISVPSRQLFIDGEWKVPVHNNRIPIINPATEDIIGDIPAGTKEDIDLAVDAAKRALSRNKGRDWSSASGSVRAGYLRAIASKITEKKDELGKLEAIDSGKPLDEALADLDDVIACFNYYAELAEGLDAKQKAPVSLPMETFKSYILKEPIGVVALITPWNYPLLMATWKVAPALAAGCAAILKPSELASVTCLELAEVCREVNLPPGVLNVVTGLGNDAGAPLASHPDVDKVAFTGSSLTGSKIMSAAAQLTKPVSLELGGKSPIIVFEDVDLDKTAEWTIFGCFFTNGQICSATSRLIVHESIATEFVDKLVKWAKNIKISDPLEEGCRLGPIVSEGQYKKVLSFISTAKSEGATILTGGSRPEHLKRGYFVEPTIISDVTTSMQIWREEVFGPVLSVKTFSTEEEAIELANDTQYGLGSAVMSKDLERCERISQAIKAGIVWINCAQPSFIQAPWGGIKRSGFGRELGEWGLENYLSVKQVTKYISDEQWGWYQPPSKL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01154 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620
Vimu10g01154 503 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 277 - -
Vimu10g01154 503 SUPERFAMILY ALDH-like 5 486 IPR016161 GO:0016491
Vimu10g01154 503 FunFam Betaine aldehyde dehydrogenase 263 454 - -
Vimu10g01154 503 CDD ALDH_F10_BADH 27 487 - -
Vimu10g01154 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
Vimu10g01154 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491
Vimu10g01154 503 PANTHER ALDEHYDE DEHYDROGENASE 5 502 - -
Vimu10g01154 503 Pfam Aldehyde dehydrogenase family 22 485 IPR015590 GO:0016491
Vimu10g01154 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01154 Vimu-Chr10 11132262 11136267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01154 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 75.547 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01154 K00130 - gmx:100170755 929.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01154 10 11132262 11136267 Vimu10g01154 10 11132262 11136267 ECH
Vimu7g00715 7 7162581 7167738 Vimu10g01154 10 11132262 11136267 PCT