Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01152 ATGTCTACCTCCTCAACTCACCACACCTATAGCCGAAAGCAGAAATCACTCGGCTTATTTTTTCTCAGGCTTTACAACAGAGATGGCGTCCGCTTAATTGGTCTCGATGACGCCGCATCGCGATTAGGTGTTGAGAGACGCCGGATCTACGACATCGTCAACGTCCTAGAGAGCGTCGGGGTGCTGGCCAGAAAAGCTAAGAATCAGTATACCTGGAAAGGCTTTTCTGCGATTCCCGAGGCTTTGCAAGAACTCAAGGAAGATGGTTTGAAAGAGAATCCTGGGTCTTTTGATGACTCCAATGACAGCGCGAAAGTGTCTGATGATGAGGACGAGGAGGAAACTTCTCCCATTGTCAATACTGAAAGTCAGAATGACAAGGAAATTCCTGATTCCACCGCTCTTGGTCTATCCTCTAAGAATGAAAACAGAAGGGAAAAGTCTCTGGCATTGCTTACTCAGAATTTTGTTAAGCTTTTTATCTGCTCTAGTGTGACTAAAGTCAGACGCCTATATGATATTGCCAATGTGTTATCCTCCATGAACCTAATCGAGAAGACCCATACAACAAATACAAGAAAACCAGCATTTAGATGGTTGGGTTGGAGAGGTAAAGCATGGAGTGAATCAGTTGACTTAGCTCACAATCCAAATTTCAACGAGCCAGGGAAAAGAAAGTTTGGAACTGACATCACAAACACAAGTTTTAAAAGGAGCAAAACTGATTTTCTGTTGGATGGCCACACCTGTAAAATGCAAAATCAACAAGAAAATATCAGTTACAGAGTACAGCCCGACAGAAGCAACTTTGAAAAAGATGCAAAAACTTCAAAGGGCTATCAGTTTGGTCCTTTCGCTCCAACTTATGTGCCCAAAGTCGGAACCTCTGAAAATAATAGCGGGAATCAGGTGCATGACTGGGACAGCCTCGCACAGGTTCATCGTCCTCAGTATCAAAACCAAGAGGGTCAACATGTGTGGTATGCAGTGGGTAGATGTTTGCAACTTGCAAGTAGGTCCAAAGCTAGTGCAAATTTACAGAGTGCGAAGAATGATGAGATGGTAGGAGAGATTTTTGGCACAGTTGGTGACGTCAACATCATTTTAGAGGGGCATTGA 1119 0.4379 MSTSSTHHTYSRKQKSLGLFFLRLYNRDGVRLIGLDDAASRLGVERRRIYDIVNVLESVGVLARKAKNQYTWKGFSAIPEALQELKEDGLKENPGSFDDSNDSAKVSDDEDEEETSPIVNTESQNDKEIPDSTALGLSSKNENRREKSLALLTQNFVKLFICSSVTKVRRLYDIANVLSSMNLIEKTHTTNTRKPAFRWLGWRGKAWSESVDLAHNPNFNEPGKRKFGTDITNTSFKRSKTDFLLDGHTCKMQNQQENISYRVQPDRSNFEKDAKTSKGYQFGPFAPTYVPKVGTSENNSGNQVHDWDSLAQVHRPQYQNQEGQHVWYAVGRCLQLASRSKASANLQSAKNDEMVGEIFGTVGDVNIILEGH 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01152 372 Gene3D - 7 76 IPR036388 -
Vimu10g01152 372 Gene3D - 138 203 IPR036388 -
Vimu10g01152 372 SUPERFAMILY "Winged helix" DNA-binding domain 12 72 IPR036390 -
Vimu10g01152 372 MobiDBLite consensus disorder prediction 118 139 - -
Vimu10g01152 372 Pfam E2F/DP family winged-helix DNA-binding domain 14 74 IPR003316 GO:0005667|GO:0006355
Vimu10g01152 372 Pfam E2F/DP family winged-helix DNA-binding domain 146 201 IPR003316 GO:0005667|GO:0006355
Vimu10g01152 372 SMART E2F_TDP_2 12 74 IPR003316 GO:0005667|GO:0006355
Vimu10g01152 372 SMART E2F_TDP_2 144 201 IPR003316 GO:0005667|GO:0006355
Vimu10g01152 372 PANTHER TRANSCRIPTION FACTOR E2F 5 319 IPR015633 GO:0000978|GO:0006357
Vimu10g01152 372 SUPERFAMILY "Winged helix" DNA-binding domain 146 202 IPR036390 -
Vimu10g01152 372 MobiDBLite consensus disorder prediction 90 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01152 Vimu-Chr10 11104389 11109340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01152 7 321 E2F-DP Transcription Factor Family AT3G48160 50.562 9.55e-90 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vimu10g01152 E2F_TDP 6.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01152 K09391 - gmx:100818090 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01152 10 11104389 11109340 Vimu10g01152 10 11104389 11109340 ECH
Vimu7g00716 7 7173276 7176704 Vimu10g01152 10 11104389 11109340 PCT