Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01144 ATGGAGACTATTATAGGGACATCACGCCTCAGTGCAAAGGACGGAGTGGCTACGGAAAAGGTGGCTTTTCATCCCACGGCGGCTCTTCACGCCAAACCATCGACCACTCTTGAGATGCTACATAAAAGATTTGAAACTGCAGAGGGTGCGATGGCTGCCGCCAGTGATGTTTTCATGCCGGAAGTGGGTTCCGGGAAGCTCCACGTCCTTGCCGTTGATGACAGCCACGTCGACCGCAAGGTTATTGAGAGGTTGCTCAAAATCTCGTCTTGCAAAGTGACTGTGGTGGAAAGTGGAAGCAGGGCTCTGCAGTATCTGGGGTTGGATGGAGAGAAGAGCTCCATTGGTTTTGATAGTGTCAAGGTTAATTTGATAATGACAGACTACTCCATGCCGGGTATGACAGGATATGAACTGCTCAAGAAGATAAAGGAATCATCTGTGTTTAGAGAGGTTCCAGTGGTGGTTATGTCGTCTGAAAATATCTTGACTCGAATCGATAGTTGCCTGGAGGAAGGAGCAGAAGAGTTTCTGTTGAAACCTGTGAAGTTGTCAGATGTAAAACGCGTGACAGATTTCATAATGAAAGGTGAAGGGAAGAAAGGTCATAAAAGAAGCAGATCAGATGATTATAGCCCTCCATCATCATCATCATCATCATCTATTTCAACTGCTTTCTCATCAGTTTCTCATCCCTGTGATCTATCTTTGCCTGCATCACCTTCTGCATTGCTATCAAAGAAAACCAGATTGAGCATATAG 762 0.4567 METIIGTSRLSAKDGVATEKVAFHPTAALHAKPSTTLEMLHKRFETAEGAMAAASDVFMPEVGSGKLHVLAVDDSHVDRKVIERLLKISSCKVTVVESGSRALQYLGLDGEKSSIGFDSVKVNLIMTDYSMPGMTGYELLKKIKESSVFREVPVVVMSSENILTRIDSCLEEGAEEFLLKPVKLSDVKRVTDFIMKGEGKKGHKRSRSDDYSPPSSSSSSSISTAFSSVSHPCDLSLPASPSALLSKKTRLSI 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01144 253 Pfam Response regulator receiver domain 69 188 IPR001789 GO:0000160
Vimu10g01144 253 Gene3D - 66 225 - -
Vimu10g01144 253 ProSiteProfiles Response regulatory domain profile. 68 195 IPR001789 GO:0000160
Vimu10g01144 253 MobiDBLite consensus disorder prediction 198 230 - -
Vimu10g01144 253 SUPERFAMILY CheY-like 66 195 IPR011006 -
Vimu10g01144 253 PANTHER TWO-COMPONENT RESPONSE REGULATOR 67 215 IPR045279 GO:0009736
Vimu10g01144 253 SMART REC_2 67 191 IPR001789 GO:0000160
Vimu10g01144 253 CDD REC_typeA_ARR 69 190 - -
Vimu10g01144 253 MobiDBLite consensus disorder prediction 211 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01144 Vimu-Chr10 11032524 11038331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01144 67 198 Response Regulator Gene Family AT5G62920 82.576 7.27e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu10g01144 Response_reg 1.3e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01144 K14492 - gmx:100306152 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02543 11 44927538 44928616 Vimu10g01144 10 11032524 11038331 ECH
Vimu10g01144 10 11032524 11038331 Vimu10g01144 10 11032524 11038331 ECH
Vimu7g00718 7 7209774 7211508 Vimu10g01144 10 11032524 11038331 PCT