Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01143 TACCGCCAGAGAAACAAAATTGGAGCAAGTTTGCTTCGAGAATCTGGAGTGAACCTTGAGTATATAAACAAAGTTGGTGGCAATGTGAAGGGATTAATCGTTGAAGAAAATGGAGTGGATGTTCTTTATGTGGTGGACACAGAAAGAAGACCATTGATAACTGGATTCCAAAATAGTATACTCAATCCGAGTTTCGAACACGATGAAGATGAAAAGAGAATAGATATAATGGTCCAAAGCTTGGTTGTTCATGAGAATCATCAAGTACTTAAGCCAGAATCACAAACACCATCGATTTCAACATCACTAACACCAACACAAAACCTCCCACAATCACCTCAGCCACCACCACCACCACCACAATCTTCACCAATTATTCTTGAGAACAAGAAAACTCAACCACCACCTCCTCCTCCTCCTCCTCCAACTCGTCCTCCACCACCACCACCTGGTCCACCTCCTCTTCCAAAAGCCAGTGGCTTTATTTCGTTTGATGATGAACTGATGGAGTCACTCTTTGGGTATTCAAGTAGCTATAAAACACAAGAAAGAAACAGAACTCTTTCCACTTTGGCCAAGTCCAATTCCAATACACCAACTCAAATATTCATTCTTGACCCAAGAAAATCTCAAAACACTGCCATTGTGCTAAGATCACTTGCCATTTCTCGCAAGGGAATCTTGGATGCTGTTCTTGATGGTCAAGGTCTAAGTGTTGAGACGCTTGAAAGACTCACTAAAATAGCTCCCACCCAAGAAGAGGAAGCTAAAATCATCCAATTCAGTGGCAACCCAGATCAGCTTGCTGATGCCGAGTCTTTCCTGCACTACATTCTTAAAGCGGTTCCAACAGCATTCAACCGTTTGAAAGCGATGCTTTTCAGGTCGAGTTATGATTGTGAAGTTCTTCAGCTCAAGGAACAACTACAAGCGCTTGAAATGGGTTGCAAGGAACTGAGAACTAGTGGTCTGTTTTTGAAACTCCTTGAGGCCATTCTCAAGGCTGGGAATCGAATGAATGCTGGAACTTCAAGAGGCAATGCACAAGGTTTCAACCTGAGTGCTCTTAGAAAACTTTCTGACGTGAAAAGCACAGATGGGAAGACCAGTTTGCTTCATTTTATAGTAGAACAAGTGGTTCAGTCAGAAGGAAAAAGACAAGCTCTCTATCGAAAGCACAAACTTCACACAAGCAATGTTGAAGCAAACAATGTGAATAGAGCTTATTCATATAGACTGATACAACAAGAGGAAGATAAAGAACACACAATGCTTGGTTTGCAAGTGTTACGTGGGCTAAGTGATGAGTTATCTGAAGCAAAGAAAGCAGCTAGTATTGAGTATCACAATTTTATCACAATGTGTTCCACTCTGAATGCTCATGTTACTGAAATTAGACAGATTGTAACGTGTTGTGGCTACACCAGAAGTGGTGGATTTATCAACGAAATGAAAGGGTTCTTGGAGGAATGTGAGGGAGAACTTGAGGTGGTGAAAGAGGAGCAGACAAGGATCATGGAGCTTGTGAAGAAAACAAACGATTACTATCTAGCAGGAGCATCCAAAGACAACATGGTAAACCCCTTTCAACTGTTTGTTATTGTAAAGAATTTTGTTGACATGGTTGATCAGGCTTGCATAGAACTAAAAAGGAAGTTGGAAAAGAAGAATGTGGGAGGAGAAGCTGTGTCAACAACACCACCTTTGTCACCATCAAAGAGGGCACCACTGAGATTCCCTAACTTTGATTTGTATTTTCTGTCAAATGTGTCAGAAACTTCATCTTCTAGCCAGTCAGAAGATGATTTCTGA 1812 0.4134 YRQRNKIGASLLRESGVNLEYINKVGGNVKGLIVEENGVDVLYVVDTERRPLITGFQNSILNPSFEHDEDEKRIDIMVQSLVVHENHQVLKPESQTPSISTSLTPTQNLPQSPQPPPPPPQSSPIILENKKTQPPPPPPPPPTRPPPPPPGPPPLPKASGFISFDDELMESLFGYSSSYKTQERNRTLSTLAKSNSNTPTQIFILDPRKSQNTAIVLRSLAISRKGILDAVLDGQGLSVETLERLTKIAPTQEEEAKIIQFSGNPDQLADAESFLHYILKAVPTAFNRLKAMLFRSSYDCEVLQLKEQLQALEMGCKELRTSGLFLKLLEAILKAGNRMNAGTSRGNAQGFNLSALRKLSDVKSTDGKTSLLHFIVEQVVQSEGKRQALYRKHKLHTSNVEANNVNRAYSYRLIQQEEDKEHTMLGLQVLRGLSDELSEAKKAASIEYHNFITMCSTLNAHVTEIRQIVTCCGYTRSGGFINEMKGFLEECEGELEVVKEEQTRIMELVKKTNDYYLAGASKDNMVNPFQLFVIVKNFVDMVDQACIELKRKLEKKNVGGEAVSTTPPLSPSKRAPLRFPNFDLYFLSNVSETSSSSQSEDDF 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01143 603 MobiDBLite consensus disorder prediction 109 157 - -
Vimu10g01143 603 ProSiteProfiles Formin homology-2 (FH2) domain profile. 133 568 IPR015425 -
Vimu10g01143 603 PANTHER FORMIN-RELATED 162 581 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vimu10g01143 603 Coils Coil 302 322 - -
Vimu10g01143 603 Coils Coil 481 501 - -
Vimu10g01143 603 MobiDBLite consensus disorder prediction 90 108 - -
Vimu10g01143 603 Gene3D Formin, FH2 domain 155 561 IPR042201 -
Vimu10g01143 603 MobiDBLite consensus disorder prediction 90 161 - -
Vimu10g01143 603 SUPERFAMILY Formin homology 2 domain (FH2 domain) 145 556 - -
Vimu10g01143 603 Pfam Formin Homology 2 Domain 164 542 IPR015425 -
Vimu10g01143 603 SMART it6_source 133 557 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01143 Vimu-Chr10 11015777 11018006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01143 27 601 FH2 protein (formin) Gene Family AT1G70140 38.608 8.41e-130 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01143 - - gmx:100819989 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02535 11 44721879 44724311 Vimu10g01143 10 11015777 11018006 ECH
Vimu10g01143 10 11015777 11018006 Vimu10g01143 10 11015777 11018006 ECH