Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01139 ATGCCTCTCTCCTCCGCCTCCGCCTCCGCCGCCGTCGCCCCTCACTCTGCCTCCTCCGCCGAGATCATGCTCTTCGGAGTCAGAGTCGTCGTGGACTCCATGAGGAAGAGCGTCAGCATGAACAACCTCTCCCAGTACGATCACCATCGCGATACCGCCGCCGCCAAAGACGACGCCGTCGCCGCTGGCTACGCCTCCGCCGATGATGCCGCTCCGAACAACTCCGGAAAAAACCGCGACCGCAAGCGAGGGATTCCATGGACGGAGGAAGAGCACAAGCTGTTCTTGGTTGGGTTGCAGAAAGTGGGGAAAGGTGACTGGAGAGGAATCTCAAGGAACTATGTCAAGACGCGGACACCAACTCAAGTTGCTAGCCATGCTCAAAAGTATTTTCTCCGCCGTACCAACCTCAATCGCCGTCGCCGTAGATCCAGCCTCTTCGACATAACCACCGATTCGGTAAGTTGTGTTCAGGTCTCTACAACCCCAATGGAAGAAGGACAGATTCAGTATCAAGATAATGTGTCTCTTGTGCATCCCATGTACCCTGTTACCGCTGAAGGAAGCAACATGAACGGATTTTCAAAGTTGCCTATGTATTCAAATGACATTGGTACTGGAGTTATGTCAGCTCAAGCTGGGAATCCAATGAAAATACTTACTTTGGGACAAGGAAATGTGGAGCAGAATGGGCCTAGTACTAAGCTAGTTTGTACAACAGCTCCTGTTGTTCCAGATTATAAAGGCTCCACAGCGTCTGATATCACTGCCACCAGTTTAAGTTCACTTGATCCACCAACACTGTCTCTCGGGTTATCTTTGTCATCTAGTCAAAGACAAACTTCATCAATACATTCAGCTTTTCATTCACTGTCGTGTTTCAACAATGGAGATAGCTTCATAACCGTTGCTTAG 915 0.5016 MPLSSASASAAVAPHSASSAEIMLFGVRVVVDSMRKSVSMNNLSQYDHHRDTAAAKDDAVAAGYASADDAAPNNSGKNRDRKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRTNLNRRRRRSSLFDITTDSVSCVQVSTTPMEEGQIQYQDNVSLVHPMYPVTAEGSNMNGFSKLPMYSNDIGTGVMSAQAGNPMKILTLGQGNVEQNGPSTKLVCTTAPVVPDYKGSTASDITATSLSSLDPPTLSLGLSLSSSQRQTSSIHSAFHSLSCFNNGDSFITVA 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01139 304 Gene3D - 85 137 - -
Vimu10g01139 304 Pfam Myb-like DNA-binding domain 86 131 IPR001005 -
Vimu10g01139 304 NCBIfam myb-like DNA-binding domain, SHAQKYF class 82 133 IPR006447 GO:0003677
Vimu10g01139 304 MobiDBLite consensus disorder prediction 65 85 - -
Vimu10g01139 304 SUPERFAMILY Homeodomain-like 81 135 IPR009057 -
Vimu10g01139 304 PANTHER TRANSCRIPTION FACTOR KUA1 19 220 - -
Vimu10g01139 304 FunFam transcription factor MYB1R1 85 136 - -
Vimu10g01139 304 SMART sant 83 133 IPR001005 -
Vimu10g01139 304 CDD SANT 86 131 IPR001005 -
Vimu10g01139 304 ProSiteProfiles Myb-like domain profile. 79 131 IPR001005 -
Vimu10g01139 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 135 IPR017930 -
Vimu10g01139 304 ProSiteProfiles SANT domain profile. 87 135 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01139 Vimu-Chr10 10940189 10942720 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu10g01139 Myb_DNA-binding 1.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01139 - - gmx:778056 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01139 10 10940189 10942720 Vimu10g01139 10 10940189 10942720 ECH
Vimu7g00729 7 7295771 7297175 Vimu10g01139 10 10940189 10942720 PCT