Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01138 ATGTTGGTGTGTCATATTCATCCATTAACACACCTCTTTACAGTCTCATGCTCTCACCTCCCAATGGATCCTCCTCTCATATCTGACTCCACATTCTCCTCCGCTTACACCCTCGCCGATATTTGGCTCGGAACAACTCCTGCTTTTCCCCCTTCCGACCACCACTTCTCCAAGAATGACTCTGGTAGCAATAAACGGATGAAGGTGGAAGGGTGCAGTGTCAAAAATGATGGTTTCAAAGATGAAGCAGAAACAAGTTCTGTGAGTGGTAACAAGTCAAGTGAACAAAGCACTGTACCTTGTGAGGCACCTAAGCAAGACTACATTCACGTGAGAGCAAGAAGGGGCCAAGCTACCGATAACCACAGTCTAGCAGAAAGAGCAAGAAGAGAAAAGATCAGTGAGAGAATGAGAATTCTTCAGGATTTGGTTCCAGGGTGTAACAAGGTAATTGGTAAAGCACTAGTCCTAGATGAGATAATCAATTACATACAGTCGCTGCAGCGTCAGTTCCTTTCTATGAAGCTTGAAGCAGTTAATTCAAGGATGAACATGAGCCTTAACACAGATGGGTTTCCTTTAAAAGATGTTGGTGGTACTGGAATGGTATTTGGATCACAAGCAGCAACAGGGTATGCTCAGGGATCACATCCTGGATGCCTGCATATGCATATAGGTGGTGGTTTGAGAGAACAACATGATTCAGAGGTGTCTCATGGGAATGAAACATCATTTGATAGGTTTGATTTTCTTCTAAAAAACTAA 765 0.434 MLVCHIHPLTHLFTVSCSHLPMDPPLISDSTFSSAYTLADIWLGTTPAFPPSDHHFSKNDSGSNKRMKVEGCSVKNDGFKDEAETSSVSGNKSSEQSTVPCEAPKQDYIHVRARRGQATDNHSLAERARREKISERMRILQDLVPGCNKVIGKALVLDEIINYIQSLQRQFLSMKLEAVNSRMNMSLNTDGFPLKDVGGTGMVFGSQAATGYAQGSHPGCLHMHIGGGLREQHDSEVSHGNETSFDRFDFLLKN 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01138 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 115 178 IPR036638 GO:0046983
Vimu10g01138 254 Gene3D - 114 190 IPR036638 GO:0046983
Vimu10g01138 254 MobiDBLite consensus disorder prediction 76 104 - -
Vimu10g01138 254 CDD bHLH_AtBPE_like 107 190 - -
Vimu10g01138 254 Pfam Helix-loop-helix DNA-binding domain 121 168 IPR011598 GO:0046983
Vimu10g01138 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 117 167 IPR011598 GO:0046983
Vimu10g01138 254 FunFam Basic helix-loop-helix transcription factor 114 184 - -
Vimu10g01138 254 MobiDBLite consensus disorder prediction 83 101 - -
Vimu10g01138 254 SMART finulus 123 173 IPR011598 GO:0046983
Vimu10g01138 254 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 58 218 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01138 Vimu-Chr10 10921419 10924450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01138 22 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 41.071 1.43e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu10g01138 HLH 5.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01138 - - vra:106758689 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01138 10 10921419 10924450 Vimu10g01138 10 10921419 10924450 ECH