Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01135 ATGGTCAATGTCAAAAGGGGTGTGTGGACCACAGAAGAAGACACAAAGAAGCTTGCATTTGGTTCCAAGCATGGATCTGGTAACTGGACTTCTGTCCCCAGAAAAACAAGGCTCAAGAGGTGTGGGAAGAGTTGTAGGCTTAGGTGGAGTAACTGCCTCAGGACTGATCTTAAGCACGACAATTTCACAACCCAAGAAGAAGATCTAATCATTAAGCTTCACGCAGCCATAGGTAGCAGGTGGTCTATAATAGCCCAACAACTTCCTGGGAGAACAGACAACGATGTAAAGATCTACTGGAACACAAAGCTGAAAAAGAAACTCTCTCAAATGGGGATTGATCCTGTTACCCACAAGCCCTTTTCTAAACTCATTGCTGACTATGGAAACATTGGGGGTTGCCAGAAACCAAGTACCAGAATAGGGTCTATCAATAAAGACTTCAAGAGTGCAATGATGCTAAAATCAGAAGAACCACATCAAACCATGCCACAAGGATTTACAAATGACCAATCACTAGAAACCACTAGAAACAACTTTTTATTCAACAGAGCTCATGGTGATAATCTCTCAATGCTGTCACGCACCGACTTTGAGAATGAGATGATCTCAGGATGTGCGTTAGGGGAAGATCGTTTGTCAAAAACTTCATCTCCTTCTACTCCTTCTTCTTGTTCCACTTCAGCTTTTAGTTGGAATGACTTCCTTCTTCTAGAAGATGCTTTTACACCACTTGACTACCAGCAAAAAGACACCCTGGTTTCAAAGGAGAATGTGGTGACCATACAGAGTTGGAATAACAAAGAGGTCAAGTCACAGCATGCCTCAGGTAGTACTGACTTCCAATTTTCATCATCCTCTCACACTTCATTCATAGAAGCCATGCTTGATCAAGAGAATGAAATGTTTCTGAGTTTTCCTCACCTTATGGAGGAACCATCCAACTTTAGTTGA 954 0.4214 MVNVKRGVWTTEEDTKKLAFGSKHGSGNWTSVPRKTRLKRCGKSCRLRWSNCLRTDLKHDNFTTQEEDLIIKLHAAIGSRWSIIAQQLPGRTDNDVKIYWNTKLKKKLSQMGIDPVTHKPFSKLIADYGNIGGCQKPSTRIGSINKDFKSAMMLKSEEPHQTMPQGFTNDQSLETTRNNFLFNRAHGDNLSMLSRTDFENEMISGCALGEDRLSKTSSPSTPSSCSTSAFSWNDFLLLEDAFTPLDYQQKDTLVSKENVVTIQSWNNKEVKSQHASGSTDFQFSSSSHTSFIEAMLDQENEMFLSFPHLMEEPSNFS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01135 317 CDD SANT 61 104 IPR001005 -
Vimu10g01135 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Vimu10g01135 317 Gene3D - 1 59 - -
Vimu10g01135 317 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Vimu10g01135 317 PANTHER F14D16.11-RELATED 3 314 - -
Vimu10g01135 317 Gene3D - 60 120 - -
Vimu10g01135 317 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Vimu10g01135 317 Pfam Myb-like DNA-binding domain 6 52 IPR001005 -
Vimu10g01135 317 Pfam Myb-like DNA-binding domain 61 102 IPR001005 -
Vimu10g01135 317 CDD SANT 9 51 IPR001005 -
Vimu10g01135 317 FunFam Os07g0634900 protein 61 120 - -
Vimu10g01135 317 SMART sant 58 106 IPR001005 -
Vimu10g01135 317 SMART sant 5 55 IPR001005 -
Vimu10g01135 317 SUPERFAMILY Homeodomain-like 3 100 IPR009057 -
Vimu10g01135 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 108 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01135 Vimu-Chr10 10908729 10909843 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01135 3 312 MYB Transcription Factor Family AT3G28470 40.000 3.02e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu10g01135 Myb_DNA-binding 3.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01135 K09422 - gmx:100795381 443.351