Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01133 ATGTCCCAAGGATCTCCCCTGCAAGACAACACAGAACCCTCGCCGGAACCCGATTCGCACAAGGACCAAGCAACCACCAACACCGCCGCTACTGCCGCCGCCGATGCTGCTGCTCCTCCCGCCCCCACCAGGAACCGCCCCTCTCGCGCCTGTACCATTCGCACGGCTGCGCGTCTCTATTCGGCGTCGCAGCCGGCCAGGCCCAAGGCTGCAAAGAGGGAGCCTCGCCGCGAGGAGTCGCCCCAGCCGCCGTCGCCGCAGCCGCAGCAATGCGGCAAGATCGTGACGCCGCTGGTGGAACCGCCCCCGCCTGCACAGTTGCCGCGTTACAACCTCCGGTCTATGTGGGAATTGGCTTCAATACTTAATTTTTTAAATCTTTTTAGGCATCTTTTGAATATTTCAGTAGAATTCTCGGCTGAAGAGTTTGAGACGGCTTTACTCACTCCCAATGACACATTGAGTGATATACATATGCCTTTGCTAAAGGCAATTCCTCCAATTACACGAATGGCACTCTCACGTGATACTTGGATAACCGTATTATGCAGAAAATTAAGAGATTGGTGGCACTGGGTTGCGGATGGGGATCTTCCTATTGTTGCTTCACATGGAGCGGAGATTGAAGTATATAAATCACTTGATCCAGGGGTTCGTGTGGTCATCTTAAAAGCATTATGTGACATTCGTGTTGAGCAAGAAGATATCAGGAGTTACATTGACAGCTCAATCAAGCATGGCATTCCACTTTCAACATTTCGCAAGGACCGTATTGGTGGCGATTCACATGGAGTTTCTTATTGGTATGAAGATGACGAAAATATTGGTCAGAGGTTGTATCGGGAGATAAGGAAAACTGAGGTGGTTCAAATGAAGAAAGGGAAACCAAGAGGTTCCCAGGTTTTTTCTAATACAACCTACCAGTGGGAAACAGTTGCTACCAATTTTGATGAATTTCTGGATGTTTCTGAGAAGCTTTTCACAAGTAAAAACAGAACAGAGGTTTCTGTGGGGAAGAAGGTGAAGATAGACATGCTTCCTGAAATTGAGAAGGTTCACAAGAGAAAGGAGAGATTGATGAAAAAACAACACAGACAAGCTCTTCTTCTTGATAATTTCTTAGGTGTTGATGGGCTTGCTCTAGGGCGTTCACTACGTGATAGGAAACCTGTTACCTACACTTTTGATGATTATGATCGGTCCATCAACGAGGCAATTAAGATAACCAAACGGAAGCCACCGTCCCCAGAAGCTATACCGAGAAGAGAACCAGGATCAAAACCCGAAGCTTTATCCAATGGTAAATGGAGTGGTCCTTCCCCTTCGCATGACCCTCAAGAACTAAATTTTGGCATGCTGTCTCCAAAATCACCAGACTTCGATGATATGGAGGAAGATAATCAAACTGACATACTGGACTTGGATAGAAGCAATCGACGAAGACAGAGGCCTAAACGGTATTCAGAGAAAGAGTTTGTCGAAGCATTGTCAGATAATGAGGCTGACTATGACAGTGATGATGATATTGTGGGAGAAGCAGTGTATTCTGAAGAGTATCTTCAGAAACGCAAGCAGAGAAGGAAGGCTTCTAGTAGCTCTGGTTCTGAAGGAGATGAAGAATATAATTGGAATGAAGATAATATCGAAGAGGAAGAAGAAGATGATGAAGAAGATTCCATGAGTGTCAGTGAGGAGAGTGACAAGCCCCGTAAATTCAAGCGATTGGCAGGCCGAACTAGAAGGGAAACTAAACTCAGGTCTGTGGGTGAGATTCAATCAGGTCTAAGACGCAGTAAGAGGGCAACACAAAAACGTATAAATTACCGGCAGTTAGAGATGTCTGACTCAGAAACCGAGTTCATTAAACCTGACAAGTCTAATGCAAATGCATCAGATGATCACTCAGATCCTTCTGAGAATGGAGATTATATGATGGAAAGTGAAGACTCAGATGGCAATGACGATGAAGAACAGGAAACCAAAGATGTGGAGGCTGTTACTTACCCTGCAGAAGGGAACAACCAATATCCTGCTGTAGAGGAGAATGAACAAAGCAAAATCCAGCCTCCTGAAAAATCTAGTAGTCCAGGCCAGGAGGAAGTTGAAGGCACCACAAAGCGACGCTTCCTTGATTTGAATGAGCTTGCCCCTAGCTCAGGTTTTGATGATGCTCCAAATACAACAACCAAAGATGAAGGCAATGATGATTTGTGA 2214 0.4584 MSQGSPLQDNTEPSPEPDSHKDQATTNTAATAAADAAAPPAPTRNRPSRACTIRTAARLYSASQPARPKAAKREPRREESPQPPSPQPQQCGKIVTPLVEPPPPAQLPRYNLRSMWELASILNFLNLFRHLLNISVEFSAEEFETALLTPNDTLSDIHMPLLKAIPPITRMALSRDTWITVLCRKLRDWWHWVADGDLPIVASHGAEIEVYKSLDPGVRVVILKALCDIRVEQEDIRSYIDSSIKHGIPLSTFRKDRIGGDSHGVSYWYEDDENIGQRLYREIRKTEVVQMKKGKPRGSQVFSNTTYQWETVATNFDEFLDVSEKLFTSKNRTEVSVGKKVKIDMLPEIEKVHKRKERLMKKQHRQALLLDNFLGVDGLALGRSLRDRKPVTYTFDDYDRSINEAIKITKRKPPSPEAIPRREPGSKPEALSNGKWSGPSPSHDPQELNFGMLSPKSPDFDDMEEDNQTDILDLDRSNRRRQRPKRYSEKEFVEALSDNEADYDSDDDIVGEAVYSEEYLQKRKQRRKASSSSGSEGDEEYNWNEDNIEEEEEDDEEDSMSVSEESDKPRKFKRLAGRTRRETKLRSVGEIQSGLRRSKRATQKRINYRQLEMSDSETEFIKPDKSNANASDDHSDPSENGDYMMESEDSDGNDDEEQETKDVEAVTYPAEGNNQYPAVEENEQSKIQPPEKSSSPGQEEVEGTTKRRFLDLNELAPSSGFDDAPNTTTKDEGNDDL 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01133 737 MobiDBLite consensus disorder prediction 406 424 - -
Vimu10g01133 737 MobiDBLite consensus disorder prediction 610 641 - -
Vimu10g01133 737 PANTHER REMODELING AND SPACING FACTOR 1 44 730 IPR028938 GO:0006355|GO:0031213
Vimu10g01133 737 MobiDBLite consensus disorder prediction 517 534 - -
Vimu10g01133 737 MobiDBLite consensus disorder prediction 498 513 - -
Vimu10g01133 737 MobiDBLite consensus disorder prediction 1 102 - -
Vimu10g01133 737 MobiDBLite consensus disorder prediction 406 737 - -
Vimu10g01133 737 MobiDBLite consensus disorder prediction 539 562 - -
Vimu10g01133 737 MobiDBLite consensus disorder prediction 642 661 - -
Vimu10g01133 737 MobiDBLite consensus disorder prediction 470 497 - -
Vimu10g01133 737 Pfam DDT domain 120 165 IPR018501 -
Vimu10g01133 737 MobiDBLite consensus disorder prediction 677 700 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01133 Vimu-Chr10 10872467 10881064 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vimu10g01133 DDT 1.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01133 - - gmx:100796430 1135.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00739 7 7384610 7392125 Vimu10g01133 10 10872467 10881064 PCT