Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01126 ATGGGAAACTGTAACGTGTGTGCGAAAGCTGATGTGGTGGAAGATAATAGCAAGAAGTCGAGCGACGGCAACCGCGCCCGGAAAAAGGAGGCGAACCAGAAAAAACCGAACCCGTTTTCGGACGAACCGGGGCGGTCGGCGGCACCGATCCGCGTTCTGAAGGACGTGATTCCAATGAGCCACAGGACGCGCATAAGCGATAAGTACATATTGGGCCGGGAATTGGGCCGGGGCGAGTTCGGCATCACCTACCTCTGCACGGACCGGGAAACCAAGGAGGCGTTGGCCTGCAAATCGATCTCGAAGAGGAAGCTTCGGACCGCCGTGGACATCGAGGACGTGCGGCGCGAGGTGGCTATCATGTCCACGCTTCCGGAGCATCCCAACGTCGTGAAGCTCAAGGCTACCTACGAGGACAACGAGAACGTGCACCTCGTGATGGAGCTCTGCGAGGGAGGAGAACTTTTCGACAGAATCGTCGCCCGCGGACACTACAGCGAGCGTGCGGCCGCCGCCGTGGCGCGCACCATCGCTGAAGTTGTGAGGATGTGCCATAGCAATGGCGTCATGCACAGAGACCTCAAGCCTGAGAACTTCCTCTTCGCAAATAAGAAGGAAAATTCCGCTCTCAAAGCCATCGATTTTGGCCTCTCCGTGTTCTTCAAACCAGGGGAGAGGTTTGCGGAGATTGTTGGGAGTCCTTACTACATGGCGCCGGAAGTTCTGAAGCGGAATTACGGGCCGGAGGTGGATGTGTGGAGTGCTGGAGTGATTCTTTACATTTTGTTGTGTGGGGTTCCCCCGTTTTGGGCAGAGACTGAGCAAGGTGTGGCGTTGGCGATCTTGAGGGGTGTGATTGACTTCAAGAGGGAACCTTGGCCGCAGATATCGGAGAGTGCCAAGAGCCTTGTGCGCCGAATGTTGGAGCCTGATCCTAAAAAGCGTTTGACAGCTGAACAGGTTCTTGTTGGTGGAAACTGGGAAGGTGGGGAATTTGGAACGAAAACCGCTTCACATTTTGTTGGTATGGCTAAAGCTCCAAATGTTCCATTGGGAGATATAGTGAGGTCAAGGCTTAAGCAGTTTTCTGTGATGAATAGATTCAAAAAGAGAGCTCTGCGGGTAATTGCAGAGCATTTATCTGTTGAAGAAGTAGAAATAATCAAAGATATGTTTACATTGATGGATACTGACAAAGATGGCAGAGTAACATATGAGGAGCTGAAGGCTGGATTGAGGAAAGTTGGTTCACAATTGGCTGAGCCAGAGATAAAGATGCTGATGGAAGTGGCTGATGTTGATGGGAATGGAGTACTTGACTATGGAGAGTTTGTAGCTGTTACAATTCACTTGCAAAAAATGGAGAACGATGAGCATTTCCACAAAGCTTTCAAGTTTTTTGACAAAGATGGGAGTGGTTATATTGAGTCTGGCGAGTTACAAGAAGCATTAGCAGATGAGTCAGGAGAAACCGATGCTGATGTATTACACGATATCATGCGTGAAGTAGACACTGACAAGGATGGTCGCATTAGTTACGAGGAGTTCGTGGCAATGATGAAGACTGGAACTGACTGGAGAAAAGCGTCTCGGCAATATTCAAGAGAGAGATTCAAGAGTTTGAGCCTAAATTTGATGAAGGATGGCTCGCTTCAGCTTCATGATGGAATTACTGCTACTCATTTTTCTTGCGTCATTGTTGTGGTTGGAAGTCTTGGGAAGCTCTCCATGAAAGCAAGTTTTGGGAAGCTTGCGTTGGAGGATTGCAATTGCATACTAAAGATGGTTGATAGCCTGTCACCAAAAGGTGTGGAGAGCAGATGCTACAGCTACATACCCTGA 1842 0.4957 MGNCNVCAKADVVEDNSKKSSDGNRARKKEANQKKPNPFSDEPGRSAAPIRVLKDVIPMSHRTRISDKYILGRELGRGEFGITYLCTDRETKEALACKSISKRKLRTAVDIEDVRREVAIMSTLPEHPNVVKLKATYEDNENVHLVMELCEGGELFDRIVARGHYSERAAAAVARTIAEVVRMCHSNGVMHRDLKPENFLFANKKENSALKAIDFGLSVFFKPGERFAEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVALAILRGVIDFKREPWPQISESAKSLVRRMLEPDPKKRLTAEQVLVGGNWEGGEFGTKTASHFVGMAKAPNVPLGDIVRSRLKQFSVMNRFKKRALRVIAEHLSVEEVEIIKDMFTLMDTDKDGRVTYEELKAGLRKVGSQLAEPEIKMLMEVADVDGNGVLDYGEFVAVTIHLQKMENDEHFHKAFKFFDKDGSGYIESGELQEALADESGETDADVLHDIMREVDTDKDGRISYEEFVAMMKTGTDWRKASRQYSRERFKSLSLNLMKDGSLQLHDGITATHFSCVIVVVGSLGKLSMKASFGKLALEDCNCILKMVDSLSPKGVESRCYSYIP 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01126 613 ProSitePatterns EF-hand calcium-binding domain. 504 516 IPR018247 -
Vimu10g01126 613 SUPERFAMILY EF-hand 368 547 IPR011992 -
Vimu10g01126 613 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Vimu10g01126 613 FunFam calcium-dependent protein kinase 13 155 329 - -
Vimu10g01126 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Vimu10g01126 613 Gene3D Transferase(Phosphotransferase) domain 1 156 331 - -
Vimu10g01126 613 ProSiteProfiles EF-hand calcium-binding domain profile. 419 454 IPR002048 GO:0005509
Vimu10g01126 613 MobiDBLite consensus disorder prediction 14 36 - -
Vimu10g01126 613 Gene3D - 335 522 - -
Vimu10g01126 613 ProSitePatterns EF-hand calcium-binding domain. 468 480 IPR018247 -
Vimu10g01126 613 PANTHER SERINE/THREONINE-PROTEIN KINASE 61 516 - -
Vimu10g01126 613 FunFam Calcium-dependent protein kinase 1 71 154 - -
Vimu10g01126 613 Pfam EF-hand domain pair 458 521 IPR002048 GO:0005509
Vimu10g01126 613 Pfam EF-hand domain pair 388 447 IPR002048 GO:0005509
Vimu10g01126 613 Pfam Protein kinase domain 71 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01126 613 SMART serkin_6 69 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01126 613 Gene3D Phosphorylase Kinase; domain 1 70 155 - -
Vimu10g01126 613 ProSiteProfiles EF-hand calcium-binding domain profile. 491 526 IPR002048 GO:0005509
Vimu10g01126 613 MobiDBLite consensus disorder prediction 14 47 - -
Vimu10g01126 613 ProSitePatterns EF-hand calcium-binding domain. 432 444 IPR018247 -
Vimu10g01126 613 CDD EFh 459 521 IPR002048 GO:0005509
Vimu10g01126 613 CDD STKc_CAMK 68 322 - -
Vimu10g01126 613 FunFam Calcium-dependent protein kinase 7 349 524 - -
Vimu10g01126 613 ProSiteProfiles Protein kinase domain profile. 69 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01126 613 ProSiteProfiles EF-hand calcium-binding domain profile. 383 418 IPR002048 GO:0005509
Vimu10g01126 613 SMART efh_1 423 451 IPR002048 GO:0005509
Vimu10g01126 613 SMART efh_1 495 523 IPR002048 GO:0005509
Vimu10g01126 613 SMART efh_1 387 415 IPR002048 GO:0005509
Vimu10g01126 613 SMART efh_1 459 487 IPR002048 GO:0005509
Vimu10g01126 613 SUPERFAMILY Protein kinase-like (PK-like) 53 323 IPR011009 -
Vimu10g01126 613 ProSitePatterns EF-hand calcium-binding domain. 396 408 IPR018247 -
Vimu10g01126 613 ProSiteProfiles EF-hand calcium-binding domain profile. 455 490 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01126 Vimu-Chr10 10791872 10796273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01126 1 563 EF-hand Containing Proteins AT1G74740 78.546 0.0 898
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu10g01126 Pkinase 2.2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01126 K13412 - gmx:100809838 993.801