Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01125 ATGCAGATGAAAGATTGCGTTGTTGTGGTGATGAACAACAGTAGTGTTGGAATGATGAACGATGGGAGTGTGCGTTGCACCGACACCGTCATGGGCATGGACTACTACAACATACTCAAAGTGAATCGCAACGCCAGCGACGAGGATTTGAAGAAAGCGTACAAGCGGCTAGCACGCATATGGCACCCCGACAAGAACCCCGTCAACAAGAGTGAGGCGGAGGCCAAATTCAAACGAATCTCCGAAGCCTATGATGTCCTTAGTGACCCTCAGAAGCGCCAGATCTACGATCTCTACGGCGAGGAGGCTCTCAAATCCGGCCAGTTTCCGCCGCCGCCGCAGTCTTCCTCCTCCTCCTCCCGCGTCTTTAACCGCCACAACCCCCCCGCCTCCTCCTTCCGCTTCAACCCCCGCGACGCCGAAGACATTTACGCTGAGTTCTTCGGCCCGGACGACGTCGGCTCCTCGCGCCGGGACGCCTTCTTCCGGACCTCCAACGGGGGCCCCGCGTTCGGCGCCGCCGCCCCGAGGAAGGCAGCCGCGGTCGAGAATGCGCTGCCTTGCAGCTTGGAGGACCTCTACAAAGGCGTCAAGAAGAAAATGAAGATCTCCAGGAACGTCTACGACGCTTTTGGAAAATCTCGAAATGTGGAAGAGATTTTGACTATTGAGATAAAGCCTGGCTGGAAGAAAGGAACAAAGATTACCTTCCCAGAGAAGGGTAACCAGGAGCCTGGTGTCATCCCAGCAGATCTAATTTTTGTGATAGATGAGAAACCGCATGCTCTTTATAGAAGGGATGGCAATGATTTGGTGATCAACCAGGAGATAACCCTTCTTGAGGCCCTTACAGGTAAAACTTTGGACCTTACTACCTTGGATGGAAGAAGTCTCGTCTTACCATTGACAGATATTGTCAAACCCGGCGCCGAGGTGGTTGTCCCTAATGAAGGGATGCCTATATCAAAAGAGCCTGGGAAGAAGGGGAATTTGAGAGTTAAGCTTGACGTCAAGTATCCTTCAAGGCTAACTCCAGAGCAGAAGTCTGATCTGAGGAGAGAATACTCCACGGGTGAAACTGAGTACAAAGGGCTAACATGCGATGAGCCCATATCTTGA 1119 0.5246 MQMKDCVVVVMNNSSVGMMNDGSVRCTDTVMGMDYYNILKVNRNASDEDLKKAYKRLARIWHPDKNPVNKSEAEAKFKRISEAYDVLSDPQKRQIYDLYGEEALKSGQFPPPPQSSSSSSRVFNRHNPPASSFRFNPRDAEDIYAEFFGPDDVGSSRRDAFFRTSNGGPAFGAAAPRKAAAVENALPCSLEDLYKGVKKKMKISRNVYDAFGKSRNVEEILTIEIKPGWKKGTKITFPEKGNQEPGVIPADLIFVIDEKPHALYRRDGNDLVINQEITLLEALTGKTLDLTTLDGRSLVLPLTDIVKPGAEVVVPNEGMPISKEPGKKGNLRVKLDVKYPSRLTPEQKSDLRREYSTGETEYKGLTCDEPIS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01125 372 SUPERFAMILY HSP40/DnaJ peptide-binding domain 185 261 IPR008971 GO:0006457|GO:0051082
Vimu10g01125 372 MobiDBLite consensus disorder prediction 106 135 - -
Vimu10g01125 372 ProSitePatterns Nt-dnaJ domain signature. 77 96 IPR018253 -
Vimu10g01125 372 Pfam DnaJ domain 34 97 IPR001623 -
Vimu10g01125 372 FunFam DNAJ heat shock family protein 260 355 - -
Vimu10g01125 372 Gene3D DnaJ domain 32 160 IPR036869 -
Vimu10g01125 372 FunFam Dnaj homolog subfamily b member 178 259 - -
Vimu10g01125 372 CDD DnaJ_C 186 343 - -
Vimu10g01125 372 Gene3D - 261 341 - -
Vimu10g01125 372 MobiDBLite consensus disorder prediction 342 372 - -
Vimu10g01125 372 SUPERFAMILY HSP40/DnaJ peptide-binding domain 264 349 IPR008971 GO:0006457|GO:0051082
Vimu10g01125 372 SMART dnaj_3 33 92 IPR001623 -
Vimu10g01125 372 MobiDBLite consensus disorder prediction 342 359 - -
Vimu10g01125 372 Gene3D - 180 259 - -
Vimu10g01125 372 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 33 353 - -
Vimu10g01125 372 CDD DnaJ 34 89 IPR001623 -
Vimu10g01125 372 SUPERFAMILY Chaperone J-domain 33 114 IPR036869 -
Vimu10g01125 372 FunFam DnaJ subfamily B member 13 33 158 - -
Vimu10g01125 372 PRINTS DnaJ domain signature 36 54 IPR001623 -
Vimu10g01125 372 PRINTS DnaJ domain signature 54 69 IPR001623 -
Vimu10g01125 372 PRINTS DnaJ domain signature 92 111 IPR001623 -
Vimu10g01125 372 PRINTS DnaJ domain signature 72 92 IPR001623 -
Vimu10g01125 372 Pfam DnaJ C terminal domain 183 340 IPR002939 -
Vimu10g01125 372 ProSiteProfiles dnaJ domain profile. 34 100 IPR001623 -
Vimu10g01125 372 MobiDBLite consensus disorder prediction 109 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01125 Vimu-Chr10 10780511 10785509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01125 35 104 C2H2 Transcription Factor Family AT1G74250 35.135 1.88e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01125 K09510 - gmx:100781572 550.436