Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01124 ATGAGTGTAAATCAAGCTGAAAAGAAAGGGCAGAGTGTTATGGCCAATGAAGAGCAAACACAAAGAATCGTAGTGTTGGAAGATTTTTTAGATGTGTTCCGAAGTAGATGCAAGTACTACCACCTAGAAGTGTTAAAGGTGTTTAGTGATCATCAAAAGCTAATAGTGTGGAATTTCACAGGGAAAGTTAGACTGGAGATGAACCGAGCAATGCGAGAAAGTAAAAATATATGCTTGAATAGAGAAGGGATTCAAGTCACTGTTATGATGAGGATGATGTTAGAGTTGGTGGAAAAGTTCAAGGAGCTTGGGGCAAAGTTTTGGGAGGGGAAGAAGAAGCGGTCTGCCATGGGAGACAAGTCCCAAGTGTTAGAGGCTGTGTTGAAGGAAACTGTAGATTTGGAGAACATTCCCGTTGAGGAGGTTTTCGAGAACCTGAGATGTAGCAAAGAAGGTCTCAGCAGCGAGGCTGCTGAGGAAAGGTTGGTCATTTTTGGCCACAACAAGCTTGAAGAGAAAAAGGAGAGAAAATTCTTGAAGTTCTTGGGGTTCATGTGGAATCCTCTGTCATGGGTTATGGAGGCTGCTGCTATAATGGCAATTGCACTTGCCAATGGAGGGGGGAAGCCCCCTGATTGGCAAGATTTTGTTGGTATCATCACCTTGCTTCTCATCAATTCAACTATTAGTTTCATTGAGGAGAATAATGCTGGTAATGCTGCGGCTGCCCTCATGGCTCGGCTTGCTCCAAAGGCTAAGGTTCTTCGAGATGGTAGATGGAATGAACAAGATGCCTCAGTCCTGGTTCCTGGTGACATAGTTAGCATTAAACTTGGTGATATTATACCAGCGGATGCTCGTCTACTTGAAGGAGATCCTTTGAAAATTGATCAGTCTGCTCTCACTGGTGAGTCCCTGCCGGTTACGAAGGGCCCTGGTGATGGAGTGTACTCTGGTTCTACCTGTAAACAAGGAGAAATTGAAGCTGTAGTAATTGCCACTGGCGTGCATACTTTCTTTGGGAAAGCTGCTCACCTTGTAGATACCACTAATCAAGTTGGACACTTTCAAAAGGTCTTGACTGCAATTGGGAACTTCTGCATATGTTCAATTGCCGTGGGGATGTTTATTGAGATTATTGTTATGTATCCCATCCAAGATCGAGAATATCGCCCTGGAATTGATAACCTTCTTGTGCTTCTCATTGGTGGAATCCCAATTGCCATGCCCACGGTTCTCTCAGTGACTATGGCCATTGGTTCTCATAGGCTATCGCAGCAAGGGGCTATCACAAAGCGGATGACAGCTATTGAGGAAATGGCAGGCATGGATGTGCTTTGCAGTGATAAGACAGGGACGTTGACATTAAACAAGCTTACCGTTGACAAAAATCTTATCGAGGTTTTTGCAAAAGGCGTGGATGTGGATACTGTTGTTTTGATGGCTGCTCAAGCTTCAAGACTTGAGAATCAAGATGCAATAGACACTGCCATAGTTGGGATGTTAGCTGATCCAAAAGAGGCTCGTCTTGGTATCAGAGAAGTCCATTTTCTTCCTTTCAATCCCACTGATAAGAGAACGGCATTGACATATATTGATCGTGATGGTAAAATGCATAGAGTAAGCAAAGGTGCACCAGAACAGATCCTTAATCTTGCACACAATAAATCAGACATTGAACGTAGAGTTCATGCAGTTATAGATAAATTTGCAGAGCGTGGTTTACGTACCCTTGCAGTAGCATTCCAGGACGTTCCGGATGGAAAGAAAGAGAGTCCAGGTGGCCCATGGCAGTTTATTGGCCTTTTGCCTCTGTTTGACCCTCCTAGGCATGACAGTGCAGAAACAATACGCAGGGCACTTAACCTTGGAGTGAATGTTAAAATGATTACAGGGGATCAGCTAGCCATAGGAAAGGAAACTGGCCGGCGCTTGGGAATGGGTACCAACATGTATCCTTCATCTGCATTGCTTGGGCAGGACAAGGATGAATCCATATCTGCATTACCCATTGATGAACTGATTGAAAAAGCAGATGGGTTCGCTGGTGTTTTTCCTGCTAGGAAACATATTTGTGGAATGACTGGTGATGGAGTGAATGACGCACCTGCACTCAAGAAGGCCGACATTGGTATAGCTGTTGCTGATGCAACTGATGCAGCTCGGAGTGCATCTGATATTGTTTTAACAGAACCTGGCCTTAGTGTTATTATCAGTGCAGTGTTGACAAGTCGAGCCATCTTCCAGAGAATGAAAAATTATACACTTGGTTTCATGTTACTAGCTCTCATATGGAGGTTTGATTTTCCACCTTTTATGGTTCTCATTATCGCCATTCTAAATGATGGTACTATCATGACAATTTCAAAAGATCGAGTAAAACCATCACCTCTGCCTGATAGCTGGAAGCTAGCAGAGATATTTACTACTGGCATTGTGCTTGGAAGTTACTTGGCAATGATGACAGTCATATTCTTTTGGGCAGCATACAAAACTGATTTCTTCCCGCGAGTTTTTGGAGTCTCTACCCTCGAAAAAACTGCTCATGATGATATCCGAAAACTAGCCTCGGCAATCTATCTTCAAGTGAGCATCATTAGTCAGGCCCTTATATTTGTGACTCGGTCTCGGGGTTGGTCCTATGTTGAACGTCCTGGTATTTTGCTCATGACAGCTTTCGTGATTGCCCAGCTTATTGCTACATTGATTGCGGTATATGCGAACTGGAGCTTTGCTGCCATTGAAGGCATAGGTTGGGGTTGGGCTGGTGTAATATGGCTATATAACATAATATTCTACATCCCACTTGACCCCATCAAGTTTCTAATTCGATATGCTTTGAGTGGGAGGGCTTGGGAGCTTGTCATCGAGCAAAGGATTGCATTTACAAGACAAAAGGACTTTGGAAAGGAGCAAAGGGAACTTCAATGGGCACATGCACAAAGAACATTGCATGGATTACAGCCACCTGACACCAAGATGTTCACCGAGCGCACACATTTCAATGAACTCAATCAAATGGCTGAAGAAGCTAAAAGGAGAGCCGAAATTGCTAGGCTGCGAGAATTGCATACACTAAAGGGTCATGTAGAATCAGTTTTGAAATTGAAGGGGATTGATGTAGACACAATTCAGCAAGCATACACAAGAGCAGAATTCTTCAATGATGGTGACTCTGGGTTTTCTCGAAACGCTCCAAGAACCCAACAATTGGCGCCCACCGTGGGGCAAGGATTCAAGAATTCCCAAGGAGCAATGACAACCAAGTTCGACGTAGAAAAGTTCAACGGCGCTAATGACTTCGGGCTGTGGAAGATCAAGATGGAGGCAATCTTGATACAGCAGGGATGTGATGAAGCGTTGAAGGGTGAGTCGAGGATGAGTGATGCCATGACTCAAGAAGAGAAGAAGATGGGAGATAAGGCAAGGAGTACTGAGGTTGCGAAGGAGAAGACTGCCGCTGAAATCTGGGCAAAACTAGAGTCTCTGTACATGACGAGATCGTTGGCTCATAGGTTGTGCCTGAAGCAGCAACTCTTTTCGTTCAAGATGTCAGAATCAAGAACGATAGAGGAGCATATTGCAGAATTCAGCAAGATAGTTGATGATCTGGAGAATATTGAAGTGAAGTTGAAGGATGAAGATAAAGCTGTCATCCTGTTGAATGCGCTTCCAAGAACCTTTGAGCATTTCAGGGATGTGTTACTCTACGGGAAAGATCAAGTGATCACGTTAGAGGAGGTTTTGACGTCAATTCGAACCAAGGAGTTCCAAAAACTTCAAGATTCGAAGACAACCGAGGAAGGAGCGTCCGGATTGATCTCGGTGAAAGGGAAAGAGAAGAAGCAGTCTGGAAAAGAGAAGAAGCTGAATCCGGACGGTACGAAGCAGGTGCGTTGCTTCAAGTGCCAGAAGATGGGTCATATCAAGAAGTTCTGCCAGGAGAAAGGAAAGGCCGGTCGGCCACAAGAAACCGCTGATGTGGCAGAGGCGTTTGAGGGATATGAATCGGTTGGAGTGCTGGTGGCTTCGTCTGAAGATCCTCAAAGGAGTTGGGTCATGGATTCCGGCTGCTCCTATCACATGTGCCCGGTGAAGGAGTTTTTTGAGAATCTTGATCAGAAAGAGCATGGAAATGTACTGCTCGGAAATAACAAAGCTTGCCGAGTGCAATGTGTGGGGTCGGTGAGGCTGAAGATGTTTGACAATCGTGAGATGGTGTTGCAGGCTGTTAGGTATGTGCCCGAACTAAAGAGAAATTTGATTTCTATTAGTGCATTTGATCTTGGAGGTTACACCACTAAAGTTGAAGATGGAGTAATGAGGGTCTGTTCTGGAGATTCTGTGGTTACCAAAGGCAGAAGGAGGAACGACTTGTACATTCTGGAGGGATCAACAGTCATTGGTCATGTCTCAGTAGCAAGTGGGACCGAGAATACCGCCCGGTTATGGCACTTGAGGATGAGACACATCAGTGAGAAGGGTCTTGAAGAATTGGAAAAGCAAGGCTTGCTTCTGGGAGACAAACTGCAGAAGCTGGATTTCTGTGACCATTGTGTCTTAGGGAAATCACACAGGATACCGTTCGGAAAAGGGAAACACTCAACCGAACGCCCCTTTGAATATGTCCATGCTGACTTATGGGGACCGGCAAGAACCTTAACTCATGGTGGAGGAGCGTATTTCTTAAGTATAATTGATGATTTCTCAAGGAGAGTGTGGATTTACGTTCTAAAAAATAAGTCTGAAACGTTTCAGAAGTTCAAAGAGTGGCACACACAGATTGAGAACCAATTGGGGTGTAGGCTGAAATGCCTAAGAACCGATAATGGGCTGGAGTTCGTTTCAGAGGAGTTTAATGGTTTTTGCAAAGAGAAAGGAATCAGGAGGCACAGAACGGTCGTTGGAACTCCGCAACAGAATGACTTGGCCGAACGGATGAATAGAACCATTCTGGAGAGGGTCCGGTGCATGTTGCTGGGATCAGGGTTGTCAAAGGCTTTCTGGGGAGAGGCTGCCAATACGGCCATCTATCTGATTAACAGGAGTCCGTCTTCAGCTCTCAATTTTAAAACGCCAATGGAAGTGTGGAGTGGACGACCAGCTGATTACTCACACTTGAGAGTGTTTGGTTCTTTGGCGTTTGCTCATGTCAGGGGTGATAAGCTGGATTCCCGGGCGGCGAAATGTATCTTTCTTGGATACGCCGAAGGAGTTAAGGGATACAGGTTATGGAGGTTAAATTCACCTTCAAAACTAATCATTAGTAGGGATGTCATTTTTGATGAAACAAGGATGGCGATGCACCCTGAAAACTCTGGAAGTGAGAAGAAGATTCTCGTGGAGGTGGAGCATACTACTAATGGAGCTGGCACGCCCGGTGGGACTGAGGAAAACCAAACGGGTGAAGGGCAAGTTGAAAACGGTCGGACGATAGAGGAGAACCGATCGGATGAATTTCGAACAGACCTTGGTGATGATACAGATGGTATGTCTGGCGAGGGAAGTCATGGAAAAGCTGCTGGTGTTGATTTGAGAAACTATCAGCTTGTTCGTGACAGAGAAAGAAGGATCTCCAAGCCAACCAAACGGTTTGGAGAGGCGGATCTAATCTGCTACGCCCTGAATGCTGCTGAAGATCTTAACCGATCGGATGAACCGAGAAGTTATAAGGAGGCCCTTGACAGCAGCGACCGACATCTTTGGCAGGGTGCTATGGAAGAAGAGTTGGAGGCTTTGAAAAAGAATAGCACCTGGAGATTGGTGGATCTGCCGAAGGGTAAGAAGGTCATAGGTTCGAAATGGATTTTCAAGAAAAAGGAAGCTACACCGGGTGGTGAGAAAGCGAGGTACAAAGCTAGGCTTGTTGCCAAAGGCTTTACTCAGATTGAAGGCGTAGACTATCATGAGATCTTTGCTCCAGTGGTTAAGCATTGTTCGGTCAGAGTTCTGATGGCAATAGTTGCGCATTGCAATTTGCATATTGAACAGTTGGACGTTCGGACAACTTTTCTGCACGGCGATTTGGAGGAAACCATCTATATGAAGCAACCGGACGGTTTCGCTGTGGATGATAGGGTGTGTCTGTTGCAGAAGTCACTTTATGGCTTGAAGCAAAGCCCAAGGCAGTGGTACATGAAATTTGATGACTTTCTGATAAAGCTGAACTTCAAGCGGTGCAATTATGATGACTGTGTTTACACTCTGAATCATGACGGTGAAATGTTATATCTCCTGCTTTATGTGGATGATATCCTAATTGCTAGCAGTGACAGGGGCATGATCGGTGAGACGAAAGCAAGGTTGGCGGATGCTTTCGAAATGAAAGAGCTAGGGGAAGCAAGGCGGATTTTGGGCATAGACATTAAAAGGGATAGACCGGGCGGTAACCTTTTTCTGTCTCTGGAGAGGTTTCTCTTGTTGTTGTCCAGGATTGAGTGTCTACCGGTCGGTCACTAA 6459 0.4521 MSVNQAEKKGQSVMANEEQTQRIVVLEDFLDVFRSRCKYYHLEVLKVFSDHQKLIVWNFTGKVRLEMNRAMRESKNICLNREGIQVTVMMRMMLELVEKFKELGAKFWEGKKKRSAMGDKSQVLEAVLKETVDLENIPVEEVFENLRCSKEGLSSEAAEERLVIFGHNKLEEKKERKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLLINSTISFIEENNAGNAAAALMARLAPKAKVLRDGRWNEQDASVLVPGDIVSIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIAVGMFIEIIVMYPIQDREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFAKGVDVDTVVLMAAQASRLENQDAIDTAIVGMLADPKEARLGIREVHFLPFNPTDKRTALTYIDRDGKMHRVSKGAPEQILNLAHNKSDIERRVHAVIDKFAERGLRTLAVAFQDVPDGKKESPGGPWQFIGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESISALPIDELIEKADGFAGVFPARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTLGFMLLALIWRFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVSTLEKTAHDDIRKLASAIYLQVSIISQALIFVTRSRGWSYVERPGILLMTAFVIAQLIATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDPIKFLIRYALSGRAWELVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTHFNELNQMAEEAKRRAEIARLRELHTLKGHVESVLKLKGIDVDTIQQAYTRAEFFNDGDSGFSRNAPRTQQLAPTVGQGFKNSQGAMTTKFDVEKFNGANDFGLWKIKMEAILIQQGCDEALKGESRMSDAMTQEEKKMGDKARSTEVAKEKTAAEIWAKLESLYMTRSLAHRLCLKQQLFSFKMSESRTIEEHIAEFSKIVDDLENIEVKLKDEDKAVILLNALPRTFEHFRDVLLYGKDQVITLEEVLTSIRTKEFQKLQDSKTTEEGASGLISVKGKEKKQSGKEKKLNPDGTKQVRCFKCQKMGHIKKFCQEKGKAGRPQETADVAEAFEGYESVGVLVASSEDPQRSWVMDSGCSYHMCPVKEFFENLDQKEHGNVLLGNNKACRVQCVGSVRLKMFDNREMVLQAVRYVPELKRNLISISAFDLGGYTTKVEDGVMRVCSGDSVVTKGRRRNDLYILEGSTVIGHVSVASGTENTARLWHLRMRHISEKGLEELEKQGLLLGDKLQKLDFCDHCVLGKSHRIPFGKGKHSTERPFEYVHADLWGPARTLTHGGGAYFLSIIDDFSRRVWIYVLKNKSETFQKFKEWHTQIENQLGCRLKCLRTDNGLEFVSEEFNGFCKEKGIRRHRTVVGTPQQNDLAERMNRTILERVRCMLLGSGLSKAFWGEAANTAIYLINRSPSSALNFKTPMEVWSGRPADYSHLRVFGSLAFAHVRGDKLDSRAAKCIFLGYAEGVKGYRLWRLNSPSKLIISRDVIFDETRMAMHPENSGSEKKILVEVEHTTNGAGTPGGTEENQTGEGQVENGRTIEENRSDEFRTDLGDDTDGMSGEGSHGKAAGVDLRNYQLVRDRERRISKPTKRFGEADLICYALNAAEDLNRSDEPRSYKEALDSSDRHLWQGAMEEELEALKKNSTWRLVDLPKGKKVIGSKWIFKKKEATPGGEKARYKARLVAKGFTQIEGVDYHEIFAPVVKHCSVRVLMAIVAHCNLHIEQLDVRTTFLHGDLEETIYMKQPDGFAVDDRVCLLQKSLYGLKQSPRQWYMKFDDFLIKLNFKRCNYDDCVYTLNHDGEMLYLLLYVDDILIASSDRGMIGETKARLADAFEMKELGEARRILGIDIKRDRPGGNLFLSLERFLLLLSRIECLPVGH 2152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01124 2152 FunFam ATPase 4 plasma membrane-type 697 915 - -
Vimu10g01124 2152 SUPERFAMILY Calcium ATPase, transmembrane domain M 133 947 IPR023298 -
Vimu10g01124 2152 MobiDBLite consensus disorder prediction 1786 1841 - -
Vimu10g01124 2152 SUPERFAMILY Calcium ATPase, transduction domain A 250 347 IPR008250 -
Vimu10g01124 2152 SFLD Haloacid Dehalogenase 429 746 - -
Vimu10g01124 2152 SUPERFAMILY DNA/RNA polymerases 1915 2123 IPR043502 -
Vimu10g01124 2152 Gene3D - 999 1049 - -
Vimu10g01124 2152 MobiDBLite consensus disorder prediction 1279 1293 - -
Vimu10g01124 2152 NCBIfam HAD-IC family P-type ATPase 219 467 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g01124 2152 FunFam Plasma membrane ATPase 250 334 - -
Vimu10g01124 2152 Gene3D - 444 732 IPR023214 -
Vimu10g01124 2152 ProSitePatterns E1-E2 ATPases phosphorylation site. 449 455 IPR018303 -
Vimu10g01124 2152 Pfam Cation transporter/ATPase, N-terminus 136 199 IPR004014 -
Vimu10g01124 2152 Pfam haloacid dehalogenase-like hydrolase 443 709 - -
Vimu10g01124 2152 Pfam E1-E2 ATPase 248 426 - -
Vimu10g01124 2152 CDD P-type_ATPase_H 152 941 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vimu10g01124 2152 Coils Coil 1001 1021 - -
Vimu10g01124 2152 SMART Cation_ATPase_N_a_2 133 205 IPR004014 -
Vimu10g01124 2152 ProSiteProfiles Integrase catalytic domain profile. 1535 1701 IPR001584 GO:0015074
Vimu10g01124 2152 ProSiteProfiles Zinc finger CCHC-type profile. 1299 1315 IPR001878 GO:0003676|GO:0008270
Vimu10g01124 2152 Gene3D - 1532 1710 IPR036397 GO:0003676
Vimu10g01124 2152 Pfam Integrase core domain 1537 1638 IPR001584 GO:0015074
Vimu10g01124 2152 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 1916 2128 IPR013103 -
Vimu10g01124 2152 FunFam Plasma membrane ATPase 459 606 - -
Vimu10g01124 2152 SUPERFAMILY HAD-like 443 742 IPR036412 -
Vimu10g01124 2152 SUPERFAMILY Ribonuclease H-like 1537 1710 IPR012337 -
Vimu10g01124 2152 PRINTS P-type cation-transporting ATPase superfamily signature 447 461 - -
Vimu10g01124 2152 PRINTS P-type cation-transporting ATPase superfamily signature 601 612 - -
Vimu10g01124 2152 PRINTS P-type cation-transporting ATPase superfamily signature 718 730 - -
Vimu10g01124 2152 PRINTS P-type cation-transporting ATPase superfamily signature 623 633 - -
Vimu10g01124 2152 PRINTS P-type cation-transporting ATPase superfamily signature 695 714 - -
Vimu10g01124 2152 PRINTS P-type cation-transporting ATPase superfamily signature 297 311 - -
Vimu10g01124 2152 PANTHER CALCIUM-TRANSPORTING ATPASE 131 983 - -
Vimu10g01124 2152 MobiDBLite consensus disorder prediction 1809 1833 - -
Vimu10g01124 2152 Pfam GAG-pre-integrase domain 1458 1524 IPR025724 -
Vimu10g01124 2152 Gene3D - 250 334 - -
Vimu10g01124 2152 MobiDBLite consensus disorder prediction 1789 1808 - -
Vimu10g01124 2152 MobiDBLite consensus disorder prediction 1271 1293 - -
Vimu10g01124 2152 Gene3D - 212 915 - -
Vimu10g01124 2152 PRINTS H+-transporting ATPase (proton pump) signature 695 711 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g01124 2152 PRINTS H+-transporting ATPase (proton pump) signature 860 881 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g01124 2152 PRINTS H+-transporting ATPase (proton pump) signature 563 581 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g01124 2152 PRINTS H+-transporting ATPase (proton pump) signature 726 751 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g01124 2152 Pfam gag-polypeptide of LTR copia-type 1145 1255 - -
Vimu10g01124 2152 SFLD p-type atpase 429 746 IPR044492 -
Vimu10g01124 2152 Gene3D - 459 606 IPR023299 GO:0000166
Vimu10g01124 2152 NCBIfam plasma-membrane proton-efflux P-type ATPase 152 906 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vimu10g01124 2152 FunFam Plasma membrane ATPase 600 743 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01124 Vimu-Chr10 10716389 10730910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01124 117 1049 Primary Pumps ATPases AT5G62670 89.948 0.0 1733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01124 K01535 - gmx:100782459 1724.52