Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01123 ATGATACAAGGAATTTTCTTAGCAATTGGAAAAAGTCTGATGAGTCTCACTGTACATGGACCGGTATCACCTGTCATCCTGGGGAACAACGAAAATCTACCTTATATGCAACTTGGGGGTATTATATCTCCCAGCATTGGCAAACTCAGCAGACTGCAGAGACTGGCACTTCATCAGAATGGCTTACATGGAGTTATTCCTAATGAAATTGGCAATTGTACAGAGCTTAGAGCACTGGATTTATCAAGTAACTCGTTGAAGGGTGCTGTACCATCTTCTATTGGTCGTCTTACACAATTGCGTGTTCTGAACTTGTCAACTAATTTCTTTTCCGGTGAAATCCCTGACCTTGGAGTACTAAGTACCTTCGGGAACAATGCAAACCATGTCGGACATCACTTGGTTTCCCAGTGGTGCTACCACATGCAGAAAGTGATGAAGCTGCAGGCAATTCCTGCTAAAAGATCTTCACATTATGTGAAGTGGGTGTTAGTTGGTGCAATAACAATAATGGGGCTTGCACTTGTTATAACTCTTTCGTTACTATGGATTTGCTTGCTATCAAAGAAGGAAAGAGCTGCTAGAAAATACATAGAAGTTAAGGATCAAGTCAACCCAGAATCAAATAGGAAGGATGATGGTACAAAACTTATCACCTTCCATGGTGATCTGCCATACACATCATTTGAGATCATAGAAAAGTTGGAGTCTCTCGACGAAGATGATGTGGTAGGATCTGGAGGATTTGGTACCGTATATAGAATGGTGATGAATGATTGTGGTACATTTGCTGTTAAGAGGATTGACAGAAGCCGTGAAGGTTCTGATCAGGGTTTTGAGAGGGAACTAGAAATATTGGGTAGCATCAAGCACATAAATCTAGTTAACCTGCGTGGCTACTGCAGACTTCCTTCTACTAAGCTTCTAATCTACGATTATATGGCCATGGGAAGCTTAGATGATCTCTTGCATGAAAACACTGAACAATCACTGAGATGGAGTACACGCCTAAAGATTGCTCTTGGTTCTGCCCGGGGTTTGGCTTACTTGCACCATGACTGCTGCCCGAAAATTGTGCACCGAGACATAAAATCCAGCAACATCCTTCTTGATGAGAACATGGAGCCTCGTGTCTCTGATTTTGGTCTTGCAAAGCTTTTGGTTGATGAAGAGGCCCATGTTACCACAGTGGTTGCTGGCACCTTTGGTTATCTGGCACCAGAGTATCTACAAAGTGGAAGAGCGACTGAGAAGTCAGATGTGTATAGTTTTGGAGTTCTGTTGCTAGAACTTGTAACTGGAAAGAGGCCAACAGATCCTTCGTTTGCAAGGAGAGGTGTAAATGTTGTTGGTTGGATGAACACGTTCCTGAAAGAAAATAGATTGGAGGACGTAGTAGACAAAAGATGTAGTGATTCAGTAGATGCAGAATCAGTGGAGGTAATTCTTGAACTAGCAGCAAGTTGCACTGATGCAAATGCGGATGAACGTCCATCAATGAACCAAGTGTTACAGATACTGGAACAAGAGATCACTGATAAATTACTCAACCAACTTCAAGATGCTATGCTAACAACGTGGGTCTGTAAATTTGTTGTAGTGAATGACGAATGTGCAATGGTTTTTGGAAAGACCTCCATTGAAATGATTGTGGTTAATCAACATGAATTTGTTGATTACAAGAACAGAACAGCACAGATATTTGGCATTTTTGTTGGCAGGGCCCAAGTCAAACTAGGTTACAAACGCCTCACTCATTAG 1761 0.4185 MIQGIFLAIGKSLMSLTVHGPVSPVILGNNENLPYMQLGGIISPSIGKLSRLQRLALHQNGLHGVIPNEIGNCTELRALDLSSNSLKGAVPSSIGRLTQLRVLNLSTNFFSGEIPDLGVLSTFGNNANHVGHHLVSQWCYHMQKVMKLQAIPAKRSSHYVKWVLVGAITIMGLALVITLSLLWICLLSKKERAARKYIEVKDQVNPESNRKDDGTKLITFHGDLPYTSFEIIEKLESLDEDDVVGSGGFGTVYRMVMNDCGTFAVKRIDRSREGSDQGFERELEILGSIKHINLVNLRGYCRLPSTKLLIYDYMAMGSLDDLLHENTEQSLRWSTRLKIALGSARGLAYLHHDCCPKIVHRDIKSSNILLDENMEPRVSDFGLAKLLVDEEAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFARRGVNVVGWMNTFLKENRLEDVVDKRCSDSVDAESVEVILELAASCTDANADERPSMNQVLQILEQEITDKLLNQLQDAMLTTWVCKFVVVNDECAMVFGKTSIEMIVVNQHEFVDYKNRTAQIFGIFVGRAQVKLGYKRLTH 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01123 586 SMART serkin_6 238 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01123 586 Gene3D Phosphorylase Kinase; domain 1 201 313 - -
Vimu10g01123 586 Pfam Protein kinase domain 241 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01123 586 SUPERFAMILY Protein kinase-like (PK-like) 216 508 IPR011009 -
Vimu10g01123 586 ProSitePatterns Protein kinases ATP-binding region signature. 244 266 IPR017441 GO:0005524
Vimu10g01123 586 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 20 511 - -
Vimu10g01123 586 Pfam Leucine rich repeat 50 108 IPR001611 GO:0005515
Vimu10g01123 586 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 314 520 - -
Vimu10g01123 586 Gene3D Transferase(Phosphotransferase) domain 1 314 525 - -
Vimu10g01123 586 ProSitePatterns Serine/Threonine protein kinases active-site signature. 358 370 IPR008271 GO:0004672|GO:0006468
Vimu10g01123 586 FunFam Leucine-rich repeat receptor protein kinase EMS1 24 122 - -
Vimu10g01123 586 ProSiteProfiles Protein kinase domain profile. 238 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01123 586 SUPERFAMILY L domain-like 32 122 - -
Vimu10g01123 586 Gene3D Ribonuclease Inhibitor 9 139 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01123 Vimu-Chr10 10695941 10699521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01123 32 511 Receptor kinase-like Gene Family AT2G35620 47.451 8.91e-158 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Vimu10g01123 Pkinase 4.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01123 - - gmx:100805042 826.624