Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01118 ATGGTGGATGGGACTGTCTTTTCCGCTGCTTCAAGTTTAACCACTTTGCTTCCCAACCAAACACCTGCTTCCGCCTCTCAGCCTCTCGATTCCATTTTCCACTCTTCTTCTTCTTCTTCTTCCCCTTTTCTCGGTTCAAGATCTATAGTGAGCTTTGGAGGTGTTCAAGGGGGGAAAGGGTGCAACGAGTCGTTCTTCCTGCCTTACGATGATAATGGGGATGAGGACACGGACGAGTACTTTCATCAGCCTGAGAAAAAACGTAGGCTTTCCGTTGAGCAAGTGCAGTTTCTTGAGAAGAGCTTTGATGAGGAGAATAAGCTCGAACCCGAGAGGAAGATTCGGCTAGCTAAAGAACTCGGATTGCAGCCGCGGCAGGTGGCCATTTGGTTTCAGAACCGCCGGGCGCGGTGGAAGACGAAGCAGATGGAGAAGGATTATGATTCCCTGCACGCATGCTATAATGATCTCAAGGCTAGCTATGATGATCTTCTCAGGGAAAAGGATAAGCTCCAAGCTGAGGTAGCAAAGCTCAGTGAGAAGGTGCTTGAAAGAGAAAAACTGGAGGAGGGGAAATTTTACAGGGCTGAAACCAAGGAATTTCAGGAGCCGCTGCAGAAGTCTATGATTGATTCAGCTTCAGAGGGTGAAGGGTCCAAAGTTGACATTAGTTCAGCAAAGAGTGACATGTTTGATTCATCAGAAAGCCCACGTTACACTGATGGAGTGCACTCTGCTCTCCTAGAGACCGGTGATTCTTCTTATGTGTTTGAACCTGATCAGTCTGATATGTCACAGGATGAAGGAGATAACCTGAGCAAGACCCTTTTGCCTCATTACATGTTTCCCAAACTTGAAGATGTTGGTTACTCGGACCAGCCTCATAATTCATGTGATTTTGGATTTCCCGAGGAAGAGGATCAAGCCATCTGGTCTTGGTCTTACTGA 948 0.4715 MVDGTVFSAASSLTTLLPNQTPASASQPLDSIFHSSSSSSSPFLGSRSIVSFGGVQGGKGCNESFFLPYDDNGDEDTDEYFHQPEKKRRLSVEQVQFLEKSFDEENKLEPERKIRLAKELGLQPRQVAIWFQNRRARWKTKQMEKDYDSLHACYNDLKASYDDLLREKDKLQAEVAKLSEKVLEREKLEEGKFYRAETKEFQEPLQKSMIDSASEGEGSKVDISSAKSDMFDSSESPRYTDGVHSALLETGDSSYVFEPDQSDMSQDEGDNLSKTLLPHYMFPKLEDVGYSDQPHNSCDFGFPEEEDQAIWSWSY 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01118 315 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 73 228 IPR045224 GO:0003700
Vimu10g01118 315 SUPERFAMILY Homeodomain-like 72 143 IPR009057 -
Vimu10g01118 315 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
Vimu10g01118 315 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Vimu10g01118 315 FunFam homeobox-leucine zipper protein ATHB-6-like 89 135 - -
Vimu10g01118 315 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Vimu10g01118 315 Pfam Homeobox associated leucine zipper 141 182 IPR003106 GO:0006355|GO:0043565
Vimu10g01118 315 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Vimu10g01118 315 Coils Coil 154 188 - -
Vimu10g01118 315 CDD homeodomain 86 142 IPR001356 GO:0003677
Vimu10g01118 315 Gene3D - 136 185 - -
Vimu10g01118 315 SMART HOX_1 84 145 IPR001356 GO:0003677
Vimu10g01118 315 Gene3D - 89 135 - -
Vimu10g01118 315 Pfam Homeodomain 86 139 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01118 Vimu-Chr10 10656921 10658588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01118 84 182 Homeobox Transcription Factor Family AT3G01470 66.667 1.38e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu10g01118 Homeodomain 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01118 - - gmx:732618 489.189