LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu10g01112	ATGGAACCTACCAAGTTCAGTTTGCTCTTCTTTTACGTAATTTTTCTTGCAATACTCCCCAGCCTTAAGGCTAACATAGGTCACATGGACCATGTCTGGCATAGGCGAATGAAGGAAGCAAGGGAAGCTGCAAAAAAGGCATACAAGCCAAACCCCATGAAAGTTACCGCTGAATTCAATACAAAAGTCATGAGAGCGTTGAAAGGCTCCAACAGCACGAGAAGGGACTTGAAGAGCGATAGTAAATGCAAGCCAGCAAACCCAATTGACCAATGTTGGAGATGTGACCTAAATTGGGATAAAAACCGCAAGAAGCTTGCAGATTGTGTAATGGGGTTTGCCCACGGCACAACCGGAGGCAAAGATGGGAAAATCTACGTCGTAAACGACAATTCCGACGACGACCTACTGGACCCTAAAGAAGGAACATTGAGATATGCGGTTACTCGGCCAGAGCCACTGTGGATCACTTTTTCGAAAAGCATGAACATTAAGCTGAAAGGAGAGCTTATGATAACGTCTAACAAGACTATCGATGCACGTGGTGCCAATGTGCACATCAAAGATGGTGCCCAGATAACGATTCAGTACGTGAACAACGTTATCATTCATGGATTGCACATCCACGACATTAAGCCAGTTAAAGGTGGACTTATAAGAGATTCCGTCACCCACTACGGCGTTCGCGCCACCAGTGACGGCGACGGGATTTCCGTCTTTGGATCCACACATGTTTGGCTTGATCATCTTTCCATGACCAATTGCGCTGATGGCCTCATCGATGTCGTTAGTGCGTCAACTGCCGTTACCATCTCCAACTGCCATTTTGTCAAACACAACGACGTTTTGTTATTCGGCGCCACTGATAGCTTCTCAGGAGATAAAGTGATGCAGGTGACTTTGGCTTTTAACCATTTCGGGAAAGGATTGGTTCAGAGAATGCCGAGGTGCAGATGGGGCTTCTTTCATATTGTTAACAACGACTACACTCACTGGCTAATGTACGCCGTAGGTGGCAGCCAGCAACCCACAATCATCAGCCAGGGAAACCGTTTTGTCGCCCCGGAAGACAGAAATGCAAAAGAAGTGACAAAAAGGACTGAGACAACTTCAACTGGGTGGAAGAATTGGAATTGGAGATCGGAGGGTGATTTATTCGTGAATGGAGCCTTCTTCGTGGAGTCAGGGAAAAAGGTTGCACAGCCTCCCAAGACAGACGTGAAAGCACAATCTGCACAGTCGGTGGCTACTCTGACTAAAGATGCAGGTCCTATAAAATGTGTTCTAAACAAGGCCTGCTGA	1302	0.4662	MEPTKFSLLFFYVIFLAILPSLKANIGHMDHVWHRRMKEAREAAKKAYKPNPMKVTAEFNTKVMRALKGSNSTRRDLKSDSKCKPANPIDQCWRCDLNWDKNRKKLADCVMGFAHGTTGGKDGKIYVVNDNSDDDLLDPKEGTLRYAVTRPEPLWITFSKSMNIKLKGELMITSNKTIDARGANVHIKDGAQITIQYVNNVIIHGLHIHDIKPVKGGLIRDSVTHYGVRATSDGDGISVFGSTHVWLDHLSMTNCADGLIDVVSASTAVTISNCHFVKHNDVLLFGATDSFSGDKVMQVTLAFNHFGKGLVQRMPRCRWGFFHIVNNDYTHWLMYAVGGSQQPTIISQGNRFVAPEDRNAKEVTKRTETTSTGWKNWNWRSEGDLFVNGAFFVESGKKVAQPPKTDVKAQSAQSVATLTKDAGPIKCVLNKAC	433

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu10g01112	433	PANTHER	PECTATE LYASE 18-RELATED	40	429	IPR045032	GO:0030570
	Vimu10g01112	433	SUPERFAMILY	Pectin lyase-like	87	422	IPR011050	-
	Vimu10g01112	433	PRINTS	Pollen allergen Amb family signature	377	401	IPR018082	-
	Vimu10g01112	433	PRINTS	Pollen allergen Amb family signature	335	354	IPR018082	-
	Vimu10g01112	433	PRINTS	Pollen allergen Amb family signature	109	126	IPR018082	-
	Vimu10g01112	433	PRINTS	Pollen allergen Amb family signature	313	332	IPR018082	-
	Vimu10g01112	433	PRINTS	Pollen allergen Amb family signature	169	185	IPR018082	-
	Vimu10g01112	433	PRINTS	Pollen allergen Amb family signature	233	254	IPR018082	-
	Vimu10g01112	433	PRINTS	Pollen allergen Amb family signature	133	158	IPR018082	-
	Vimu10g01112	433	SMART	amb_all	161	358	IPR002022	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu10g01112	Vimu-Chr10	10618088	10620021	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu10g01112	8	433	Polysaccharide Lyase	AT1G14420	55.580	3.63e-180	509

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu10g01112	K01728		-	gmx:100801864	699.893

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