LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu10g01108	ATGGAGTTTCCTTCTCAAACATCCTGTCACCAGGTACAGGAAGACAACAGAACTGAATCAAGTCCTCCAGATGAACAACACCCACGTCAACAAGAGATTGTTATGCAGGAGCCAGCTCTGGCTACTCCCGAAAGATCAACCGTGGAGGCTGGGCCAAATGTTTCTTTCCTATCCAAAAAGGAAGAGGGTGATGAACTTGAAAATGCGAAAGCCGAAATGGGTGAAGTGATAGAAGAAAACCAAAGATTAAAGATGCGTTTGAACAGAATACTAAATGATTACCGAACACTGCAAATGCAATTCCAGAGTATAGTTGAACAAGAGAGAAAAGATTGTTCTGGTGAAGATGAAGAAGCGATGGAGGAATCAGAACTAGTTTCCCTGAGTCTTGGAAGAATTCGAATTCCAAGAAGAAACGAGAAAGGGAAAGTCCCTAAAACATTGAAAGAGGAAGAAGATAAAGAAGGGTTGTCCCTTGGATTGGAGTGGAAGTTCGAAACATCAAAATCTGGAAGCGGAAGTGAACATGTGGGGAATGGAAGCCCTAGCAATAGTGTTGAAGAAGTGGTAAAAGAAGAAGGTGGTGGAGAAAGCAAGGGACAGAAGACAAATAGAGATGAGATTGGTGAGCAAAACCCTGCCAAGAAAGCAAGAGTTTGCGTGAGAGCTAGATGCGACACCCCAACTTTGAACGATGGATGTCAATGGAGGAAATATGGCCAGAAGATTTCAAAGGGAAATCCTTGTCCTCGAGCTTATTATCGTTGCACAGTTGCACCATCATGCCCAGTGAGAAAACAGGTACAAAGATGTGCTCAAGACATGTCGATATTAATCACCACCTACGAAGGAATCCACAACCACCCTCTTCCTCTTTCTGCAACAGCCATGGCTTCCACCACTTCCGCAGCTGCTTCCATGCTATTGTCTGGATCAAGAACTTCTCCAAACATCACCACCACTGCTGCAGATCTTCATGGAATCAACTTTTCCCTCTCAGATTCTTCCCAACCAAATCAATACTACCTTTCTCATCCTTCACTCTCATCTTCACCTTCACATCCCACCATCACTCTCGACCTCACTTCCAATCCATCCTCCTCTTCACCTCCTTTTGTCAAATTCACTTCAAGTTCAAACTACAACCCTCACAGGTACCCTCCTTCCACAAGCCTCAGCTTCACTTCCTCCCAATCTAACACAACTTCTTGGACCAACGGCTTTTTCAGCTACAACAATCAACCATATAATAACAACAGGAATGCCAATGCCAATGTCAACATAAACCTTGGTAAACAACAACCTATGGAGAACATCTACAGTTCCTTCATGCAAAGGAACAACAATCCAATCCCTCCTCCGCCGGACACCATAGCTGCAGCAACGAAAGTAATCACAGCAGACCCTAATTTTCAGTCAGCTTTGGCAGCGGCACTTTCTTCAGTTATTGGCTCAGGAAGCATTCAGGGAAACCAAGGTGCTGTAGAAAATCTGATTCAGAAAATAAAATGGGGTGAATTGCTTCCACCTTCATCTTCAAAAGTCAATGGGTGTGCTTCAAGCTTCTTGAACAAATCACCAGCTAATTCACAAGCAGGAAGTTTGATGTTTCTTCAACCACCTTTGCCACTTTCTAGCCCCAAAAGCGCTTCTGGGTCCCCCGGAGATCATAGAGACAAGAAAAATTAG	1689	0.4399	MEFPSQTSCHQVQEDNRTESSPPDEQHPRQQEIVMQEPALATPERSTVEAGPNVSFLSKKEEGDELENAKAEMGEVIEENQRLKMRLNRILNDYRTLQMQFQSIVEQERKDCSGEDEEAMEESELVSLSLGRIRIPRRNEKGKVPKTLKEEEDKEGLSLGLEWKFETSKSGSGSEHVGNGSPSNSVEEVVKEEGGGESKGQKTNRDEIGEQNPAKKARVCVRARCDTPTLNDGCQWRKYGQKISKGNPCPRAYYRCTVAPSCPVRKQVQRCAQDMSILITTYEGIHNHPLPLSATAMASTTSAAASMLLSGSRTSPNITTTAADLHGINFSLSDSSQPNQYYLSHPSLSSSPSHPTITLDLTSNPSSSSPPFVKFTSSSNYNPHRYPPSTSLSFTSSQSNTTSWTNGFFSYNNQPYNNNRNANANVNINLGKQQPMENIYSSFMQRNNNPIPPPPDTIAAATKVITADPNFQSALAAALSSVIGSGSIQGNQGAVENLIQKIKWGELLPPSSSKVNGCASSFLNKSPANSQAGSLMFLQPPLPLSSPKSASGSPGDHRDKKN	562

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu10g01108	562	Coils	Coil	59	100	-	-
	Vimu10g01108	562	MobiDBLite	consensus disorder prediction	533	562	-	-
	Vimu10g01108	562	SUPERFAMILY	WRKY DNA-binding domain	223	291	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vimu10g01108	562	FunFam	probable WRKY transcription factor 31	215	292	-	-
	Vimu10g01108	562	ProSiteProfiles	WRKY domain profile.	225	291	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vimu10g01108	562	MobiDBLite	consensus disorder prediction	168	213	-	-
	Vimu10g01108	562	MobiDBLite	consensus disorder prediction	168	186	-	-
	Vimu10g01108	562	Gene3D	WRKY domain	215	292	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vimu10g01108	562	MobiDBLite	consensus disorder prediction	1	63	-	-
	Vimu10g01108	562	MobiDBLite	consensus disorder prediction	353	372	-	-
	Vimu10g01108	562	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	58	492	IPR044810	GO:0003700
	Vimu10g01108	562	SMART	WRKY_cls	230	290	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vimu10g01108	562	MobiDBLite	consensus disorder prediction	1	16	-	-
	Vimu10g01108	562	Pfam	WRKY DNA -binding domain	231	289	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vimu10g01108	562	MobiDBLite	consensus disorder prediction	190	213	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu10g01108	Vimu-Chr10	10540936	10546065	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu10g01108	73	501	WRKY Transcription Factor Family	AT5G15130	40.919	1.57e-84	270

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vimu10g01108		WRKY	2.5e-23	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu10g01108	-		-	vun:114162352	812.757