Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01100 ATGGCACACCTTAATACGGAGCAGTGTTTATTATTAAGTAAATTGGTTGTTGGGGATTCGTTGGACACTGACGCACAAGTTCTGTTGAAGCTGAAATCTTATTTGCTGGCCCAAACTCGTACGAATAGAGGAGGGTACATAAGCTGGAACAAGAACAGTTCAAATCCTTGTGAATGGTCAGGAATCGATTGCAGCCTCTTGAACGGGACAACACTGAGGGTTGTGAAAGTAGACATCTCTTACAGTGAAATATATGGTAACATATTCGATGGGTTCTCTAATCTCACTGAGCTCAGACACCTTGACATCTCTTGGAACTCTCTCTCTGGGGGGATTCCTGAGGACTTGAGGATGAGCCAGAAGCTTGTGTATCTCAATCTCTCCCATAATACTCTCGAGGGGGAGTTGAATCTAAAGGGATTGACTCAGTTGCAAACCGTGGACTTGTCTGTTAATAGGTTCCGTGGGGAACTTGGGTTGAGTTTCCCTGCCATTTGTGACAGTTTGGTGACTTTAAATGTTTCAGAAAATCACTTGAGTGGTGGGATTCATGGCTTCTTTGATCAATGCTTGAGTTTGCAGCACTTGGATTTGAGCACCAACCATCTAAATGGGACCTTGTGGACTGGATTTTCCAGGCTGAGACAGTTTTCAATTTCAGAGAATTTTCTCACTGGGGTTGTTCCTCCCCAGGCTTTTCCAGTAAACTGTAGCACCGAAAAACTGGACCTTTCAGTTAATTTTTTTGTTGGTAAGGTCCCCGAGGAGGTGTCAAACTGCAAGAACTTGGTGGTTCTCAACCTCTCTAGTAACAATTTCACGGGAGATATTCCCCGTGAAATTGGTTCCATTTCTGGTCTTCAGGGATTGTTCTTGGCGAACAATACTTTCTCAAGGGATATCCCAGAGACCCTTTTGACCTTGACCAATTTGTTCATCTTGGATTTGAGCAGAAACCAATTTGGTGGGGAAGTGCAGGAGATTTTTGGGAAATTCAAGCAACTGAAGTTTCTTTTGCTGCACTCAAATTACTACACAGGAGGGTTGAACTCATCAGGCATTTTTACATTGACAAACCTTGGACGTTTGGACTTAAGCTTCAATAATTTTTCTGGTCCATTACCTGTTGAAATATCAGAAATGTCTGCACTCGCTTTCTTAACCTTAACCTACAACCAGTTCTCTGGACCTATTCCTCCTGAATTGGGAAAGTTGACTCACCTTATGGCACTTGATCTTGCCTTCAACAATTTCAGTGGAACGATCCCACCAACCCTTGGAAACTTGACTTCTCTCTTATGGCTAACCCTTTCAGATAATTCATTAACCGGAGAAATCCCACCAGAGTTGGGAAACTGCTCGAGCATGTTATGGCTAAACCTTGCAAACAACAAACTATATGGAAAAATTCCTTCCGATCTAACAAGAATTGGAAGGAATGCAAGGGCCACATTTGAATCAAATGAAAAGAATCTTGGGGGAGTTGTTGCTGGCAATAGTGAGTGCTTAGGAATGAAGAGATGGATACCTGCTGATTACCCTCCGTTCAGCTTTGTGTATACCATCCTGACAAGGAAGAATTGTAGGGCCCTTTGGGACAGGTTGCTCAAAGGATATGGTATCTTCCCCATGTGTAGTTCTGATCCCTCTGCTAAATCATCACACATAGCAGGGTATGTTCAGCTAAGTGGGAACGATTTGAGTGGAGAGATTCCTTCAGAAATTGAAAATATGGTAAACTTTAGCATGTTGCATTTGGGAGATAACAAGTTCACTGGGAAATTCCCTCCAGGGATGGTAGGTTTACCACTCGTAGTCTTGAACATGACCAGAAACAATTTTTCTGGTGAAATTCCAAGTGAAATTGGCGACATGAAGTGTCTACAGGATCTTGATTTGTCTAGGAACAATTTCTCTGGAACATTTCCCATAAGTCTGGCACACTTGGATGAGCTTAGCAGGTTCAACATCTCATACAATCCCCTCATATCTGGTACAGTCCCACCATCCGGACACTTACTCACTTTTGACAAGGATTCATATTTGGGTGACCCCCACCTGATACTCCCAAAGTTCTTTAATATCTCTGATGATAGAAATAGCACATTACAAAGAGTCTTAAAAAATCCAACAAAATGGTCTTTGGTTTTGGCTCTAGGATTAGCTATCGTGGTCTTTGGACTTCTTTTCCTTGTAATATGTTTCTTGGTGAAAAGTCCATCTGTAGAACCAGAGAACCTCATGAAGAATATAAAGAATAAGAAAGCACATAATTCAGGAAGCTCCGGATCCTCACCATGGTATTCTGACACAGTTAAGATATTCCACCTGAACAAGACGGTTTTCACACATGCAGACATCTTGAAAGCAACCTCCAACTTCACAGAGGAAAGAGTCATAGGAAGGGGTGGCTATGGAACAGTATATAGAGGGTCATTTCCGGATGGGAGAGAGGTGGCAGTGAAGAAGCTCCAAAGGGAAGGAACTGAGGGTGAAAAAGAATTCAGAGCTGAAATGAAGGTTCTAAGTGGTCATGGATTTAGCTGGCCTCATCCAAACCTTGTCACACTCTATGGTTGGTGCCTCTATGGTTCACAGAAGATACTTGTTTATGAGTACATAGGAGGTGGAAGCTTGGAGGAACTTGTGACTGATACAAAAAGGTTGAAATGGAGGAGGCGCCTAGAAGTGGCAATTGATGTGGCTAGGGCACTTGTCTATTTACACCATGAGTGCTACCCTTCTATTGTGCATAGAGATGTGAAGGCCAGTAATGTGTTGCTAGACAAGAATGGGAAGGCCAAGGTCACAGACTTTGGACTTGCTAGGATTGTTGATGTTGGAGACAGTCATGTGAGCACTATAGTGGCTGGCACAGTGGGCTATGTTGCGCCAGAATATGGACAAACATGGAAAGCCACCACAAAAGGGGATGTGTACAGCTTTGGGGTGTTGGTTATGGAGCTAGCAACTGGGAGAAGAGCGGTGGATGGAGGAGAAGAGTGTTTGGTGGAATGGACTAGGCGTGTTATGATGGATTCTGGAAGACAAGGGTTAGGTCAATCTGTGCAAGTTTTGTTGAAGGGAAGTGGGGTGGTTGAGGGTGCTAAGGAGATGGGTGAGTTGCTCCAAGTTGGAGTGAAATGCACACATGATGCACCACAGGCTAGGCCTAACATGAAGGAGGTTCTAGCCATGCTTATTAAGATATATGATCCCATTGGGGACTCAAATTATGGACACCTTGTGTAG 3252 0.4345 MAHLNTEQCLLLSKLVVGDSLDTDAQVLLKLKSYLLAQTRTNRGGYISWNKNSSNPCEWSGIDCSLLNGTTLRVVKVDISYSEIYGNIFDGFSNLTELRHLDISWNSLSGGIPEDLRMSQKLVYLNLSHNTLEGELNLKGLTQLQTVDLSVNRFRGELGLSFPAICDSLVTLNVSENHLSGGIHGFFDQCLSLQHLDLSTNHLNGTLWTGFSRLRQFSISENFLTGVVPPQAFPVNCSTEKLDLSVNFFVGKVPEEVSNCKNLVVLNLSSNNFTGDIPREIGSISGLQGLFLANNTFSRDIPETLLTLTNLFILDLSRNQFGGEVQEIFGKFKQLKFLLLHSNYYTGGLNSSGIFTLTNLGRLDLSFNNFSGPLPVEISEMSALAFLTLTYNQFSGPIPPELGKLTHLMALDLAFNNFSGTIPPTLGNLTSLLWLTLSDNSLTGEIPPELGNCSSMLWLNLANNKLYGKIPSDLTRIGRNARATFESNEKNLGGVVAGNSECLGMKRWIPADYPPFSFVYTILTRKNCRALWDRLLKGYGIFPMCSSDPSAKSSHIAGYVQLSGNDLSGEIPSEIENMVNFSMLHLGDNKFTGKFPPGMVGLPLVVLNMTRNNFSGEIPSEIGDMKCLQDLDLSRNNFSGTFPISLAHLDELSRFNISYNPLISGTVPPSGHLLTFDKDSYLGDPHLILPKFFNISDDRNSTLQRVLKNPTKWSLVLALGLAIVVFGLLFLVICFLVKSPSVEPENLMKNIKNKKAHNSGSSGSSPWYSDTVKIFHLNKTVFTHADILKATSNFTEERVIGRGGYGTVYRGSFPDGREVAVKKLQREGTEGEKEFRAEMKVLSGHGFSWPHPNLVTLYGWCLYGSQKILVYEYIGGGSLEELVTDTKRLKWRRRLEVAIDVARALVYLHHECYPSIVHRDVKASNVLLDKNGKAKVTDFGLARIVDVGDSHVSTIVAGTVGYVAPEYGQTWKATTKGDVYSFGVLVMELATGRRAVDGGEECLVEWTRRVMMDSGRQGLGQSVQVLLKGSGVVEGAKEMGELLQVGVKCTHDAPQARPNMKEVLAMLIKIYDPIGDSNYGHLV 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01100 1083 ProSiteProfiles Protein kinase domain profile. 794 1070 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01100 1083 Pfam Leucine rich repeat N-terminal domain 22 65 IPR013210 -
Vimu10g01100 1083 SUPERFAMILY L domain-like 73 278 - -
Vimu10g01100 1083 SUPERFAMILY L domain-like 228 478 - -
Vimu10g01100 1083 Gene3D Phosphorylase Kinase; domain 1 759 873 - -
Vimu10g01100 1083 Gene3D Transferase(Phosphotransferase) domain 1 875 1077 - -
Vimu10g01100 1083 Gene3D Ribonuclease Inhibitor 308 510 IPR032675 -
Vimu10g01100 1083 ProSitePatterns Protein kinases ATP-binding region signature. 800 823 IPR017441 GO:0005524
Vimu10g01100 1083 SUPERFAMILY L domain-like 560 677 - -
Vimu10g01100 1083 Pfam Protein kinase domain 794 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01100 1083 FunFam Leucine-rich repeat receptor protein kinase MSP1 756 873 - -
Vimu10g01100 1083 Gene3D Ribonuclease Inhibitor 558 702 IPR032675 -
Vimu10g01100 1083 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 230 325 - -
Vimu10g01100 1083 ProSitePatterns Serine/Threonine protein kinases active-site signature. 916 928 IPR008271 GO:0004672|GO:0006468
Vimu10g01100 1083 SMART LRR_typ_2 429 453 IPR003591 -
Vimu10g01100 1083 SMART LRR_typ_2 95 119 IPR003591 -
Vimu10g01100 1083 SMART LRR_typ_2 405 428 IPR003591 -
Vimu10g01100 1083 SMART LRR_typ_2 357 381 IPR003591 -
Vimu10g01100 1083 SMART LRR_typ_2 308 331 IPR003591 -
Vimu10g01100 1083 Pfam Leucine Rich Repeat 98 116 IPR001611 GO:0005515
Vimu10g01100 1083 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 874 1074 - -
Vimu10g01100 1083 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 237 1069 - -
Vimu10g01100 1083 FunFam Putative LRR receptor-like serine/threonine-protein kinase 332 494 - -
Vimu10g01100 1083 SUPERFAMILY Protein kinase-like (PK-like) 772 1068 IPR011009 -
Vimu10g01100 1083 CDD STKc_IRAK 800 1070 - -
Vimu10g01100 1083 SMART serkin_6 794 1074 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01100 1083 Gene3D Ribonuclease Inhibitor 20 163 IPR032675 -
Vimu10g01100 1083 Gene3D Ribonuclease Inhibitor 164 232 IPR032675 -
Vimu10g01100 1083 Gene3D Ribonuclease Inhibitor 233 307 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01100 Vimu-Chr10 10478665 10482057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01100 57 1070 Receptor kinase-like Gene Family AT5G07280 32.398 4.76e-142 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Vimu10g01100 Pkinase 9.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01100 - - gmx:100781769 1828.91