Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01098 ATGGGGTGTGTCAGCTCGAAGCAGGCGGTGTCCGTGACGCCGGCGATTGACCACTCGGGCGCGTTTCGGAGCAATGCTGCGGTTCTGGGCGAGTCGGAGCGCAAGGAGAAGAAGAGGAGCAAGAAGAGGACCGAGTCGGGGGGAGCGAGTCAGAGCGAGGTCGGTGAGTCGGGGAGAACGAGTTCCAATTGCGAATCGTTGAGCTTCAGGTTGGGGAACCTTCACAAGTACGTGCAGGGAGAACACGTGGCCGCCGGCTGGCCAGCGTGGCTCAGCGCCGTCGCCGGCGAAGCCATTCACGGCTGGGTCCCCCTCTGCGCCGATGCCTTTGAAAAACTCGAGAAGATAGGGCAGGGAACGTATAGCAGTGTGTTTCGGGCGAGGGAGCTTGAGACGGGGAAGATAGTGGCATTGAAGAAGGTGCGGTTCGACAATTTCGAACCGGAGAGTGTACGGTTCATGGCGCGTGAAATATTGATTCTGCGACGCCTTGATCATCCCAATATAATAAAGCTTGAGGGCTTGATTACTTCGAGGCTGTCCTGTAGCATTTACCTCGTCTTTGAGTACATGGAGCATGACATCACAGGGCTCTTGTCTTCCCCTGATATCAAATTCACTGAACCACAGATTAAGTGCTACATGAAGCAGTTGTTGGCTGGTCTTGAGCACTGTCACTTGCGGGGAGTCATGCATAGGGATATTAAGGGGTCGAATCTTTTGGTAAATAATGAAGGGGTTTTGAAGGTAGCGGATTTTGGGTTGGCGAATTATGTCAATTCTGGGCACAGGCAACCTCTGACTAGTCGTGTTGTTACCTTGTGGTACCGGCCACCAGAGCTTTTGCTTGGTTCGACGGACTATGGTCCGGCCGTGGATCTCTGGAGTGTTGGTTGTGTGTTTGCGGAGCTGCTTGTCGGGAAGCCTATACTTCAGGGGAGAACGGAGGTTGAACAATTGCACAAAATTTTTAAGCTCTGTGGCTCACCACCTGATGAATACTGGAAAAAGACTAAACTTCCTCATGCAACGTTATTTAAGCCACAACAACCATATGATAGTTGCCTTCGACAATCCTTTAAAGATTTGCCAGCGGCCAGTGTACATCTGCTGCAAACTCTTCTTTCTGTAGAACCATACAAACGTGGGAATGCTACATCTGCTCTTTCATCGGAGTATTTCAAAACAAAACCTTATGCGTGTGACCCATCAACCTTGCCGATATACCCACCTAGCAAGGAAATCGATGCAAAACACAGGGAAGAGTCAAGGATTACCTCTTATTTGGCTGGTGAAAATAAGAGAATACCTGCATATGCTTTTTACCTGGTTTTAACCAATCTGAAAAAGATTAGTGGACGAGTTCGTGGAACTGAAACAAGAAAACCATCCAGAAAGCCACACGGATTCAGTAAACTAGCCCCAGCAGAGGATTTCGCAAGTCAAACTCAGACTTCCCAGAAGGTCAATGGTAGATCTTTCCGCAACCATGAAGAAGAGAAGATTAAAATAGGTGGCAAAACACAGAAGTCATCTAGTGGTAAAGCTGAAGATGCTTCCCATACGAAGAATGCTTCTCAAGGAGATATTCCCCTTTCCGGGCCGTTACAGGTTTCAACATCAAGTGGATTTGCATGGGCAAAAAGCAGAAAAGATGACACTTCATTTCGATCCCATTGTCGAAATATTTCAAGAGGACATATTTTCAATCCATCAGAACCTTCTACATTGAATTTAAGGAATAATTTGGACACCACAAACCAGGAAAATAAAGAGTTTTGTGGGGGAGGCGTCAATTCTAGGGGTCATCAGCTGCTTGAAATTTCTAAGCTTTCAATGCAGAACCAGTGGAGTAAGTTTGATCGCCCAGATTCATTTGATGCTTCGGATGAGTACCATTCACAAGAACTGTCTATGGCCATATATCACCGAGAAGATTCAGCATCCAAGAGAAATAACCTGAGTTTTCAAGATCAAGGAGAAAGGGTTGAATTTTCTGGGCCCCTACTATCTCAAATGCACACTGTTGATGAGCTCTTGGAAAGGCATGAGCGTCACATCCGGCGAACTGTCCGGAGATCATGGTTTCAGAGAGGTAAGAAGGCGAAAAATTAA 2115 0.4733 MGCVSSKQAVSVTPAIDHSGAFRSNAAVLGESERKEKKRSKKRTESGGASQSEVGESGRTSSNCESLSFRLGNLHKYVQGEHVAAGWPAWLSAVAGEAIHGWVPLCADAFEKLEKIGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREILILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSSPDIKFTEPQIKCYMKQLLAGLEHCHLRGVMHRDIKGSNLLVNNEGVLKVADFGLANYVNSGHRQPLTSRVVTLWYRPPELLLGSTDYGPAVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTKLPHATLFKPQQPYDSCLRQSFKDLPAASVHLLQTLLSVEPYKRGNATSALSSEYFKTKPYACDPSTLPIYPPSKEIDAKHREESRITSYLAGENKRIPAYAFYLVLTNLKKISGRVRGTETRKPSRKPHGFSKLAPAEDFASQTQTSQKVNGRSFRNHEEEKIKIGGKTQKSSSGKAEDASHTKNASQGDIPLSGPLQVSTSSGFAWAKSRKDDTSFRSHCRNISRGHIFNPSEPSTLNLRNNLDTTNQENKEFCGGGVNSRGHQLLEISKLSMQNQWSKFDRPDSFDASDEYHSQELSMAIYHREDSASKRNNLSFQDQGERVEFSGPLLSQMHTVDELLERHERHIRRTVRRSWFQRGKKAKN 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01098 704 Pfam Protein kinase domain 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01098 704 MobiDBLite consensus disorder prediction 507 536 - -
Vimu10g01098 704 ProSiteProfiles Protein kinase domain profile. 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01098 704 FunFam probable serine/threonine-protein kinase At1g54610 97 192 - -
Vimu10g01098 704 MobiDBLite consensus disorder prediction 492 506 - -
Vimu10g01098 704 SUPERFAMILY Protein kinase-like (PK-like) 103 401 IPR011009 -
Vimu10g01098 704 PANTHER CELL DIVISION PROTEIN KINASE 108 398 - -
Vimu10g01098 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Vimu10g01098 704 SMART serkin_6 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01098 704 CDD STKc_CDK9_like 110 394 - -
Vimu10g01098 704 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
Vimu10g01098 704 MobiDBLite consensus disorder prediction 455 536 - -
Vimu10g01098 704 MobiDBLite consensus disorder prediction 47 62 - -
Vimu10g01098 704 FunFam probable serine/threonine-protein kinase At1g54610 193 434 - -
Vimu10g01098 704 MobiDBLite consensus disorder prediction 24 62 - -
Vimu10g01098 704 Gene3D Phosphorylase Kinase; domain 1 97 192 - -
Vimu10g01098 704 Gene3D Transferase(Phosphotransferase) domain 1 193 430 - -
Vimu10g01098 704 MobiDBLite consensus disorder prediction 477 491 - -
Vimu10g01098 704 MobiDBLite consensus disorder prediction 29 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01098 Vimu-Chr10 10432709 10440380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01098 102 436 Core Cell Cycle Gene Families AT5G10270 49.858 6.16e-114 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vimu10g01098 Pkinase 5.8e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01098 - - var:108332003 1310.05