Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01097 ATGGTGTCACCCACCGTGAAGCCGAAGAATCTGCTCCTCGACGAGAACGAAGACCTGAAAGTGTCAGACTTCGGCTTGTCTGTGCTGCCTGACCAGCGCAAATCTGATGAGATGCTCGTGACGCCGTGCAGCACGCCGACCTACGTGGCACCAGAGGTAGAAACCAAAACAACTGACAGCGTTAGGGTAAAACTGGTTCGGTCAAGAATCTTCGTCGCCGAGATGGATCGCAGATCCAATTGCACAGGTTGTAGCAGGAACATCTTGTTCAACAAGTACAAGATAGGGAAGCTACTAGGTGTACACGGGAAAAACCTCAACATAAACGACAATGTGGCTATCAAGGTCATAAAAAAAGAGAAGCTTCAGAAGGATAAGCTGGTGAAACAGATAAAGTGCGAGGTCTCCATCATGCGCTTGGTTCGTCACCCCCACATCTACTTCAACGGGGTCGATGTCGGTGGCAGTGGAAACGTCAGCAACATTGAAGATGGTAATAGCAGCAGCAACCATTCTAGGGAACTGGTCGGGGTCAAGCCGGCTTGTCCGTCTTACAATGCTTTCGAGATAATATCCTTTCTATCGCACGAGTTTGATCTGAGTAATATGTTCGAGACGAGGAAGCGATCGTCGGCAATGTTCATATCGAAGCACTCGACATTGTCGGTGATGGCAAAGTTGGAGGCGGGTGATGGGGAAGATGCAGTTCACGGTGAGAATGCAGGGAGCGACGAAAGGGAGGAAGGGGAAGTTGGGATGATAGTGGAGGTGTTTGAGGTTCCACCTTCAAGAGATACAAAGTTACATATTAAAGGTCAGGTATCACCTCCTAGAGGTATAGAATTGCATACTGAGGGTCAAGAGCTACATCCCAGAAGCTAA 882 0.4887 MVSPTVKPKNLLLDENEDLKVSDFGLSVLPDQRKSDEMLVTPCSTPTYVAPEVETKTTDSVRVKLVRSRIFVAEMDRRSNCTGCSRNILFNKYKIGKLLGVHGKNLNINDNVAIKVIKKEKLQKDKLVKQIKCEVSIMRLVRHPHIYFNGVDVGGSGNVSNIEDGNSSSNHSRELVGVKPACPSYNAFEIISFLSHEFDLSNMFETRKRSSAMFISKHSTLSVMAKLEAGDGEDAVHGENAGSDEREEGEVGMIVEVFEVPPSRDTKLHIKGQVSPPRGIELHTEGQELHPRS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01097 293 ProSiteProfiles NAF domain profile. 180 205 IPR018451 GO:0007165
Vimu10g01097 293 Gene3D Transferase(Phosphotransferase) domain 1 5 63 - -
Vimu10g01097 293 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 56 - -
Vimu10g01097 293 Pfam Protein kinase domain 6 53 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01097 293 ProSiteProfiles Protein kinase domain profile. 1 148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01097 293 Gene3D Phosphorylase Kinase; domain 1 83 149 - -
Vimu10g01097 293 MobiDBLite consensus disorder prediction 267 293 - -
Vimu10g01097 293 Pfam NAF domain 184 229 IPR004041 GO:0007165
Vimu10g01097 293 Gene3D Kinase associated domain 1, KA1 182 265 - -
Vimu10g01097 293 SUPERFAMILY Protein kinase-like (PK-like) 6 56 IPR011009 -
Vimu10g01097 293 SUPERFAMILY Protein kinase-like (PK-like) 83 146 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01097 Vimu-Chr10 10428156 10430151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01097 6 262 CBL-interacting serine-threonine protein kinases AT5G25110 28.929 5.50e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vimu10g01097 NAF 2.2e-11 CL0573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01097 - - vum:124827272 195.282