Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01096 ATGGCTCTTTTCCGAAGGTTCTTTTACCGGAAACCACCCGATCACCTCCTCGAGATCTCCGACAGACTCTATGGTCTCTCTCTCTCTCTCTCTCACATTCACTTCCTTTTTTCTTACTTTACCTACTTACTTACACCTTTTTCTTTAACTATGTCTACTTTACATTTTGACAATGTGGACTATGTTTCTGTTTCTGGGTTTTCTGTGCCATTGGGTTTGGTCTATTCCTGTTGGTCATGTTTTTCAGTTTTTGATTGTTGCTTCTCCAAGAATGTGTTGGAGGAAGAGGAGTACAAGGTTTATGTTGGGGGGGTTGTGGCTCAGCTGCAGGATCACTATCCGGATGCTTCTTTCATGGTGTTCAATTTCAGAGAAGGGGATAGGCGCAGTCGAATTTCAGACATAATGTCTCAGTACGAGATGACAGTTATGGAGTATCCTCGGCAATATGAGGGTTGCCCCCTTTTGCCTTTGGAGATGATTCACCACTTCCTTCGATCAAGTGAGAGCTGGTTGTCCTTGGAGAGCCAACAAAACGTGCTTTTGATGCACTGTGAAAGGGGTGGTTGGCCTGTGCTTGCGTTTATGCTAGCTGGTCTTCTGTTGTACAGGAAACAGTACAATGGGGAACACAAAACTCTTGAAATGGTGTACAAGCAAGCACCCAAAGAACTTCTCCACCTTCTATCCCCTTTGAATCCACAACCTTCTCATTTGAGATATCTTCAGTACATTTCCAGGAGGCATTTGGGTTCTCGGTGGCCTCCATTAGAAACACCCTTATATTTGGATTGCATTATTCTCAGAGCCCTTCCTCTGTTTGACGGAGGAAAAGGATGCAGACCGGTTGTGCGTGTCTATGGTCCAGACCCTTCAAAACCTTCCAACCGAAGTTCTAAGCTTCTTTCCTCAACTTCAATGGGCCAAAATCATGTTCGCCACTACTTGCAGGCAGAATGTATGCTCGTGAAAATTGACATCCGTTGTCATGTTCAAGGGGATGTGGTTCTTGAGTGCATACATTTAAGTGATGATTTTGTTCGTGAGGAGGTGATGTTCAGAGTCATGTTTCATACTGCGTTTGTACGGTCAAATATATTGCTGCTGAGCCGCGATGAAATTGATATTCAGTGGGATGCAAAGGATCAGTTCCTCAAGGACTTCAAATTTGAGGTGCTTTTTTTGGACGCTGATGCTGTTATGCCTAATCTAAACACAGTAGATGCGAGTGACACAGAATGTGCTTCACCTGAGGCTGAGGAATTCTATGAAGCAGAAGAGATCTTCAGCAATGTAATTGATGTACTGGAAGGTAAGGGAGATTACGATTTTCTAATGGTTCATGACAGTGAAGTGGATGATGGAAGTCATAAAGAGATCTGGAAAGAGTATTCAGATCCTCATACTTTTCTGGATTCCATGTTAGATGATGGGATTCACCAACAGGTTGATGATGCGAGGTACGAGCTTGACAAGAGGGTGGTTTTAGATACTCATGCTGTCAAAGATATTGGAGTGGATTATGGAGTAACTTTTATGGCAAAGGAAGTCACTCTGAATGCTCTTGATAAATATGGCGAAGATAACAACAAAACGGAACAAGAGTTAGATTCAGAACCAGGGCTGCAGGTGCTTGATATTTCCATACCAAAATCTGATAAATTACTTATTTCTTCTGAAAAGAAACAACTTCCTTCGAACTCAAAGCCTATGCAAGAACCACATGTTTTTCAGACAAATTATGCAAAACCCAATGTAACAACTAGGTCGTTTCCTTCTAGTAAGGGTTCTCTTCAAGATTCCATTAACTTCTCATATCCACCATCAAGGAACAATAGTTCACCACTAACATTGTCATATGTTACCTCTGAAAACAAGGAAATCATTGATGCAAAAGGAAACTCTACTTCTAGTTCTCATGGTGATAACTCAAAATCTTCGGACGCTGTTCCTGAAATAGGCTCAAAGTCTCCAGTATTATCATTACTGTCAGTCAAAGAGACATCTCTTCAGTTAGCTAATCAAGCACCACAACAGAGATATGATCAAATGTTACAACTTCATCCACCTCCACCACCTCCTCCACCTCCAATTTTTGGACAAAATAATGGGACTTTACCTCCTTCTCCTCCCATTGAAAATGGTGTAATTCCATCAAAAGTTTCACTAGCACCACCACCACCACCACCTCCTCCTCCCCCTCCTTTGCAGTCTACAAATGAACCTTCGCTTCCTTCTACCTCAATCTCTCCGAAAACGTTTAAAGCTCCACCTCCTGCACCCCGACCACCACATTATCCTTCACCTCCTTTAAGTAAATCTACGCCACTTCCTCCGCCTCCTTTAGGTACTGCTCCACCAGCACCACCACCTCCTCCTCCTTTAAGTTCTGCTCCACCACCGCCACCTCCTCCTCCTTCTTTATCCAGAGGTTCACCTCCCCCACCACCTCTTCCTCCATCAAGTGGAGCACCACCTCCACCGTCATCTTCTTCACTGTCCAGAGCTCCACCTCCTCCACCTCCACCAAATCGTGGACCACCGACAACAACAATGCCTGGAGGCACAGCTCCTCCACCACCTTCAGGTGGTCGAGGCCAACCTCCTACTGGAACACGAGCTACTCTTGCTCATTCTCCTCATGTACCTCTTGGTAGTGCTCCTTTTACTTCACCAATTGGAACTGATACAAGAGGGAAAGGTCGGGGACTTGGACGTCCTACAGGGGCTGGTGCCATGGGAACTCGGAAATCCTCCTTAAAGCCTCTGCATTGGAGTAAGGTAACAAGGGCATTGCAAGGTAGTTTATGGGATGAACTACAAAGACGTGGAGAGCTTCAAATAACACAAGAGTTTGACGTTTCAGAGATAGAGAAGCTTTTTTCTGCGAATGTTCCAAAACCTGCTGATTCAGATGGTAAATCTGGCGGGCGGCGCAAATCTGTTGGATCTAAAGCTGACAAAATCCACTTGATTGACCTAAGGAGGGCCAACAATACTGAAATTATGCTCACAAAGGTTAAGATGCCTCTTCCTGATATGATGGCTGCAGTACTGGCTATGGACGATTCAGTGTTAGATGTTGATCAGGTGGAAAATCTCATTAAATTTTGTCCAACCAAAGAGGAGATAGAGCTTTTAAAGGGATACACCGGTGATAAGGAGAATTTGGGGAAGTGTGAAAAGATTCTTAGCTACAGGCTCCGACACAATTGTATTATTGGGCATCCTCCTAGTATAGGTCCACTTAATGGGAGGCCTACAACGAACAATGCTGCACCTGCACCCCAACAGTTTCACCTTGTTCTCAAGGTCTGCTCTTTAATTACATCTGCTGATCCCACGTGGCTTCAAAGTTTGGAAGATCTTGCCAATGAATCAATGCTTCTGCTGTTCCAGAGGCATTGTTTCTGGCTGTCACCACTGATGCTGTATTTTTTAGAGCTGATGAAAGTGCCAAGAGTGGAGTCAAAACTTAGAGTATTCTCTTTCAAAATTCAGTTTGGGACTCAGATTACAGAGTTTAAGAAGAGTTTACACACAGTCAACTCTGCTTGTGAAGAGGTCCGAAACTCATTCAAACTAAAGGAGATCATGAAGAAAATTCTTTATTTGGGTAATACATTGAATCAAGGAACAGCAAGGGGATCTGCTGTTGGATTCAAGTTAGATAGTCTCTTAAAACTAACGGACACTCGTGCTTCAAATAGTAAAATGACACTCATGCATTTTCTTTGCAAGGTCCTAGCTGAAAGGTTTCCTGGACTCCTTGATTTTCACCTTGACCTTATTAGCTTGGAAGCAGCCACTAAGATACAATTGAAGTCATTAGCAGAAGAAATGCAAGCAATCATCAGGGGATTAGAAAAGGTCAAACAGGAGCTGGCTGCATCTGAAAAGGATGGCCCAGTGACTGAAGTTTTTCGTAAGACATCGAAGGAATTCATTGCTGTTGCAGGGTCAGAGGTGGCATCTGTAACAAACCTATATTCTGTGGTGGGAAGAAATGCAGATGCACTTGCCCTATATTTTGGTGAGGACCCTGCCCGTTGTCCTTTCGAGCAAGTTACTGCAACTCTCTTGAATTTCACAAGGTTGTTTCTGAAGGCACATGAAGAGAATTGCAAACAAACAGTGTTAGAGAAAAAGAAAGCTGATAAAGAGGCTGAAATGGAGAAGGCTAAAGGCATTAACTTCATAAGGAAGAGTGGAAAAGATGAAGAAGAAAGTTGA 4233 0.4349 MALFRRFFYRKPPDHLLEISDRLYGLSLSLSHIHFLFSYFTYLLTPFSLTMSTLHFDNVDYVSVSGFSVPLGLVYSCWSCFSVFDCCFSKNVLEEEEYKVYVGGVVAQLQDHYPDASFMVFNFREGDRRSRISDIMSQYEMTVMEYPRQYEGCPLLPLEMIHHFLRSSESWLSLESQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYNGEHKTLEMVYKQAPKELLHLLSPLNPQPSHLRYLQYISRRHLGSRWPPLETPLYLDCIILRALPLFDGGKGCRPVVRVYGPDPSKPSNRSSKLLSSTSMGQNHVRHYLQAECMLVKIDIRCHVQGDVVLECIHLSDDFVREEVMFRVMFHTAFVRSNILLLSRDEIDIQWDAKDQFLKDFKFEVLFLDADAVMPNLNTVDASDTECASPEAEEFYEAEEIFSNVIDVLEGKGDYDFLMVHDSEVDDGSHKEIWKEYSDPHTFLDSMLDDGIHQQVDDARYELDKRVVLDTHAVKDIGVDYGVTFMAKEVTLNALDKYGEDNNKTEQELDSEPGLQVLDISIPKSDKLLISSEKKQLPSNSKPMQEPHVFQTNYAKPNVTTRSFPSSKGSLQDSINFSYPPSRNNSSPLTLSYVTSENKEIIDAKGNSTSSSHGDNSKSSDAVPEIGSKSPVLSLLSVKETSLQLANQAPQQRYDQMLQLHPPPPPPPPPIFGQNNGTLPPSPPIENGVIPSKVSLAPPPPPPPPPPPLQSTNEPSLPSTSISPKTFKAPPPAPRPPHYPSPPLSKSTPLPPPPLGTAPPAPPPPPPLSSAPPPPPPPPSLSRGSPPPPPLPPSSGAPPPPSSSSLSRAPPPPPPPNRGPPTTTMPGGTAPPPPSGGRGQPPTGTRATLAHSPHVPLGSAPFTSPIGTDTRGKGRGLGRPTGAGAMGTRKSSLKPLHWSKVTRALQGSLWDELQRRGELQITQEFDVSEIEKLFSANVPKPADSDGKSGGRRKSVGSKADKIHLIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDDSVLDVDQVENLIKFCPTKEEIELLKGYTGDKENLGKCEKILSYRLRHNCIIGHPPSIGPLNGRPTTNNAAPAPQQFHLVLKVCSLITSADPTWLQSLEDLANESMLLLFQRHCFWLSPLMLYFLELMKVPRVESKLRVFSFKIQFGTQITEFKKSLHTVNSACEEVRNSFKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHFLCKVLAERFPGLLDFHLDLISLEAATKIQLKSLAEEMQAIIRGLEKVKQELAASEKDGPVTEVFRKTSKEFIAVAGSEVASVTNLYSVVGRNADALALYFGEDPARCPFEQVTATLLNFTRLFLKAHEENCKQTVLEKKKADKEAEMEKAKGINFIRKSGKDEEES 1410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01096 1410 Coils Coil 1368 1388 - -
Vimu10g01096 1410 Gene3D - 265 394 - -
Vimu10g01096 1410 SUPERFAMILY Formin homology 2 domain (FH2 domain) 987 1066 - -
Vimu10g01096 1410 MobiDBLite consensus disorder prediction 585 617 - -
Vimu10g01096 1410 Gene3D Protein tyrosine phosphatase superfamily 79 264 IPR029021 -
Vimu10g01096 1410 SMART PTEN_C2_2 256 396 IPR014020 -
Vimu10g01096 1410 MobiDBLite consensus disorder prediction 964 983 - -
Vimu10g01096 1410 Pfam C2 domain of PTEN tumour-suppressor protein 258 394 IPR014020 -
Vimu10g01096 1410 MobiDBLite consensus disorder prediction 631 653 - -
Vimu10g01096 1410 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 259 394 IPR035892 -
Vimu10g01096 1410 Pfam Formin Homology 2 Domain 915 1063 IPR015425 -
Vimu10g01096 1410 Pfam Formin Homology 2 Domain 1144 1367 IPR015425 -
Vimu10g01096 1410 ProSiteProfiles Formin homology-2 (FH2) domain profile. 910 1393 IPR015425 -
Vimu10g01096 1410 PANTHER FORMIN-J 824 1391 - -
Vimu10g01096 1410 SMART it6_source 578 1410 IPR015425 -
Vimu10g01096 1410 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 105 246 IPR029021 -
Vimu10g01096 1410 Gene3D Formin, FH2 domain 1113 1399 IPR042201 -
Vimu10g01096 1410 MobiDBLite consensus disorder prediction 721 740 - -
Vimu10g01096 1410 PRINTS Proline rich extensin signature 724 745 - -
Vimu10g01096 1410 PRINTS Proline rich extensin signature 689 705 - -
Vimu10g01096 1410 PRINTS Proline rich extensin signature 766 783 - -
Vimu10g01096 1410 PRINTS Proline rich extensin signature 785 810 - -
Vimu10g01096 1410 PRINTS Proline rich extensin signature 745 761 - -
Vimu10g01096 1410 MobiDBLite consensus disorder prediction 752 866 - -
Vimu10g01096 1410 Gene3D Formin, FH2 domain 912 1070 IPR042201 -
Vimu10g01096 1410 MobiDBLite consensus disorder prediction 686 704 - -
Vimu10g01096 1410 ProSiteProfiles C2 tensin-type domain profile. 258 397 IPR014020 -
Vimu10g01096 1410 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1132 1395 - -
Vimu10g01096 1410 Coils Coil 1274 1301 - -
Vimu10g01096 1410 MobiDBLite consensus disorder prediction 684 917 - -
Vimu10g01096 1410 MobiDBLite consensus disorder prediction 631 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01096 Vimu-Chr10 10403982 10416940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01096 1 712 FH2 protein (formin) Gene Family AT5G07740 48.939 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01096 - - vum:124820270 1175.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01096 10 10403982 10416940 Vimu10g01096 10 10403982 10416940 ECH