Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01093 ATGGCTTCGTCTCTTTCCCCTTCTTCCTCTTCCCTCGACCAAACCCTCCGCGACGTCGACGACTACGTTTTGGTCAGTTCCTCTTCTCTCACACGCGCATTGCTTCTCCAAGATCACTTCTCCTTTTCGCTCTTTTCACTTTTAGGTCACGTTTTACGAATCTGTGCACAGCTTTTTTTCTTCCGACTTGTTTCTTTTGTTTGCCTCTTTCCTCTTTTCGTGTCCGCTTGCTGCGAAGGACTTGCCAAAAGACAAGTCCTCTTGTTTCCTCAATTTACTTTTTTCCCTTTAACTCTTAACTCTCAGGAAAATAAATCAGAAGATTTGTCATGGGACACACTACATTATGTGTACGAGCTTGTGCAGAAAGGCAATGCTGCGTTTCGAGGGAACAGAATGGAAGAGGCAATCAATTATTACTCAAGAGCCAATAACATCAAATCAGGTGATCCAATCATCCTCAGCAATCGAAGTGCAGCTTATATTAGGATTAGCCAATATTTCATGCGCAGAACACCATCATCTTCAGAATGTAGGCCGTTGAGTGGACTTGAACCAACAACACTTGCTGAATTGGCTTTAAAGGATGCTGAGAAGCTTGTTGAACTCCAAAGTAATGCAGCAAAATCATATCTTTTAAAGGCCAATGCTCTTCTCCTGGGTTCAGGAGTGTTCTCCCTCCTTTTGACTGTACCTACTTCATGGGGAACTCAATTAGAGAAATACGAAAAGGCCCGGGATGTTATTCTTTCAGGCCTTCAAGTTGATCCTTTTAGTAAATCTCTTCGGGAATCTCTTCAAAATTTAGAAAGAGTTTCATCTAGTTCAACAGGGATGAGTACACATGGACAGCCTGAGCGCAATGATGATTTTGATTGCACTCTTTGCCTGAAGTTACTGTACGAACCTGTCACAACCCCTTGTGGACATTCTTTTTGTCGATCATGTCTATTTCAGTCAATGGATCGTGGAAACAGATGCCCATTGTGCAGGACAGTTCTGTTTATTAGTCCCAGAACATGTTCCATCAGTGTGACACTGAAGAACATAATACAAAAGAACTTTGCTGAGGAATATGCTGAAAGGAAGCAAGAGCAGGATGGCTTAACCAACGCTGGTGTTGATTTACTGCCCCTTTTTGTCATGGATGTTGTCATACCATGTCAAAGGTTTCCACTCAATATATTTGAACCTCGATATAGACTCATGGCTATACTTGATTCTTCATCAGGTTCTTTAGCTGAGTTTGCATGTGAAGTGGAAATCACCGAGTGTGAACCGCTTCCAGATGGTCGTTTTTATATAGAGATTGAAAGTCGTAGGAGATTTCGAATCATCCGATCATGGGATCAAGATGGGTATCGGGTTGCAGAGGTTGAGTGGATACAGGATATTTTGCCACCAGAAGGAACTAGTGAAAGAGATACTTTACTGGAATTGACATGTAATGCAGCTGAAAGTGCTCGATCATGGATAGCAAGAGCTAAAGAAGCAGCAGAACATGATCAAAGAAAACTTGAGAGACTCGCCAGTATTGAAGTAATGATGCCCTCATTAAAAGACCCTGAGCGCTTTAGTTTTTGGCTTTGTACCCTCTCCAATAGGAGGCCTGCGGACAGATTGGATCTCCTACGCATCAGAGATACCACCGAGAGGATTAGACGGGGCCTGATATTTCTCCGACAAGAAGAACAAGGCTGCAGAATTCAGTAA 1713 0.4273 MASSLSPSSSSLDQTLRDVDDYVLVSSSSLTRALLLQDHFSFSLFSLLGHVLRICAQLFFFRLVSFVCLFPLFVSACCEGLAKRQVLLFPQFTFFPLTLNSQENKSEDLSWDTLHYVYELVQKGNAAFRGNRMEEAINYYSRANNIKSGDPIILSNRSAAYIRISQYFMRRTPSSSECRPLSGLEPTTLAELALKDAEKLVELQSNAAKSYLLKANALLLGSGVFSLLLTVPTSWGTQLEKYEKARDVILSGLQVDPFSKSLRESLQNLERVSSSSTGMSTHGQPERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLFISPRTCSISVTLKNIIQKNFAEEYAERKQEQDGLTNAGVDLLPLFVMDVVIPCQRFPLNIFEPRYRLMAILDSSSGSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAEVEWIQDILPPEGTSERDTLLELTCNAAESARSWIARAKEAAEHDQRKLERLASIEVMMPSLKDPERFSFWLCTLSNRRPADRLDLLRIRDTTERIRRGLIFLRQEEQGCRIQ 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01093 570 Gene3D - 375 405 IPR046336 -
Vimu10g01093 570 Gene3D - 406 464 IPR046336 -
Vimu10g01093 570 CDD RING-HC_LONFs_rpt2 290 334 - -
Vimu10g01093 570 Pfam ATP-dependent protease La (LON) substrate-binding domain 408 561 IPR003111 -
Vimu10g01093 570 Gene3D Tetratricopeptide repeat domain 105 275 IPR011990 GO:0005515
Vimu10g01093 570 PANTHER RING FINGER PROTEIN 127 108 563 - -
Vimu10g01093 570 SMART lon_5 376 562 IPR003111 -
Vimu10g01093 570 Pfam Zinc finger, C3HC4 type (RING finger) 293 330 - -
Vimu10g01093 570 SUPERFAMILY PUA domain-like 377 560 IPR015947 -
Vimu10g01093 570 SMART ring_2 293 330 IPR001841 -
Vimu10g01093 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 373 IPR013083 -
Vimu10g01093 570 ProSiteProfiles Zinc finger RING-type profile. 293 331 IPR001841 -
Vimu10g01093 570 SUPERFAMILY TPR-like 117 261 IPR011990 GO:0005515
Vimu10g01093 570 ProSitePatterns Zinc finger RING-type signature. 308 317 IPR017907 -
Vimu10g01093 570 SUPERFAMILY RING/U-box 288 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01093 Vimu-Chr10 10383962 10393132 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01093 281 334 C3H Transcription Factor Family AT1G74990 35.088 2.81e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01093 - - gmx:100802277 764.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01093 10 10383962 10393132 Vimu10g01093 10 10383962 10393132 ECH