Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01092 TATGCTGATAATTCTGTTAGGTCCACAAAATACACGGTTGCTACTTTCTTGCCAAAGTCACTCTTTGAGCAGTTTAGAAGGGTGGCTAATTTCTATTTCTTGGTGGCTGGGATCTTGGCCTTCACAAAGCTTACTCCTTATACTGCTGTCAGTGCTATCCTTCCACTCTCTATCATCATTGGGGCAACTATGGTGAAAGAGGGTATTGAAGACTGGCGCAGGAAAAAGCAGGATATTGAGGTTAACAATAGAAGAGTTATATTGCATAAAGGTGATGGCATTTTTGAATATACTGAATGGAAGAATCTGAGAGTAGGGAATATAGTGAAGATAATGAAGGATGAATTCTTCCCTGCTGACCTCCTACTGCTTTCCTCCAGTTATGAGGATGCAGTATGCTATGTTGAGACCATGAACTTGGATGGTGAAACAAATTTGAAATTAAAACAAGGGTTGGATGAGGACTTCAAAATATGTGATTTTAGAGCTGTCATCAAATGTGAAGACCCAAATGCAAATCTGTATTCTTTTGTTGGGAGCATGGAGTTTGAAGAGCAAAAGTACCCTCTTTCTGCTCAGCAACTTCTTCTGAGAGACTCCAAACTTCGCAATACAGACTATGTGTTTGGAGCCGTTGTCTTTACTGGTCATGACACAAAGAAATTGTCAAAGTCCTTCAGAGCATCTTCATCAATCAAGATATCCACATGTACTATGAAGAAGCAGACAAACCAGCTCGTGCCCGTACTTCAAACTTGA 759 0.4032 YADNSVRSTKYTVATFLPKSLFEQFRRVANFYFLVAGILAFTKLTPYTAVSAILPLSIIIGATMVKEGIEDWRRKKQDIEVNNRRVILHKGDGIFEYTEWKNLRVGNIVKIMKDEFFPADLLLLSSSYEDAVCYVETMNLDGETNLKLKQGLDEDFKICDFRAVIKCEDPNANLYSFVGSMEFEEQKYPLSAQQLLLRDSKLRNTDYVFGAVVFTGHDTKKLSKSFRASSSIKISTCTMKKQTNQLVPVLQT 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01092 252 Pfam Phospholipid-translocating ATPase N-terminal 1 52 IPR032631 -
Vimu10g01092 252 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 87 IPR023298 -
Vimu10g01092 252 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 247 - -
Vimu10g01092 252 Gene3D - 62 225 - -
Vimu10g01092 252 SUPERFAMILY Calcium ATPase, transduction domain A 88 220 IPR008250 -
Vimu10g01092 252 FunFam Phospholipid-transporting ATPase 62 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01092 Vimu-Chr10 10342194 10344335 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01092 1 225 Primary Pumps ATPases AT3G25610 73.077 2.98e-118 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01092 K01530 - gmx:100798329 419.083