Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01086 ATGTCAGTGATAGTGAAAGATGAAGAAGGGAGAATTTTACTACTCTCTAAAGGTGCTGACAGTGTCATGTTTGAAAGGCTTGCCAACAATGGGAGGACGTTTGAAGAGAAAACAATGGAACATGTGCATGAATATGCTGAAGCAGGTCTAAGGACTATAATACTTTCTTATCGTGAACTTGATGAAGAAGAATACAAGGAGTTTGATGGTAAATTGTCTGAAGTAAAAAGTTCAGTCTCAGAAGACAGGGAAACACTGATTGAAGAATTATTGGATACGATTGAGAGGAATCTAATCCTTCTTGGTGCCACTGCTGTAGAGGACAAGCTCCAAAATGGGGTTCCTGATTGTATCGACAAGCTAGCCCAAGCTAAGATTAAGATTTGGGTTTTGACTGGAGATAAAATGGAGACTGCCATCAATATTGGTTTCTCTTGTCGCTTGCTTAGACAAGGAATGAGACAAATTATAATTCATTTGGAGATTCCAGAAATTCAAGCGTTAGAAAAGGTTGGGGACAAGATGGCTGTTGTGAAGGATTGCTATCCTCCCACAACTGTTAGGCACATACTTCCGTGTTTCCATGTTCAGTTGCAAGTTGCTCTACTAATTTGCATTTTGTTGAAGTGTTGCTTGGTATCAAGGGAAAGTGTGCATCATCAGCTATCTGAAGGTGCTCAACTGCTTGTTGCATCCAGAGGGACCTGCCAGCAGACATTTTCTCTGATCATTGATGGAAAATCACTAACATATGCTCTAGAGGATAATATGAAAAACATGTTTCTAGAGCTTGCAAGTCATTGTGCATCTGTTATCTGCTGCCGCTCATCGCCAAAGCAGAAGGCTCTGGTTACTAGACTGGTCAAATCTGGAACTGGTAAAACAACATTAGCTATTGGTGATGGAGCTAATGATGTCGGAATGCTTCAAGAAGCAGACGAAGGGATTGGAATCAGTGGTGTCGAAGGAATGCAGGCTGTCATGTCTAGTGATATTGCAATTGCACAGTTCAAGTATTTGGAAAGATTACTTCTTGTACATGGACATTGGTGTTACCGGAGGATGTCATCAATGATATGCTATTTTTTCTTTAAGAACATCACATTTGGATTCACCCTATTCTTGTATGAGGTGTATGCATCATTCTCTGGACAGCCTGCGTACAATGACTGGTTTTTGTCTCTCTATAGTGTCTTCTTTTCGTCACTTCCTGTAATTGCCCTTGGGGTCCTTGACCAGGATGTATCTGCCAGGTACTGCCTTAAGTTTCCTATCTTATACCAAGAAGGGGTGCAAAATGTCCTCTTTAGCTGGCGTATAGTACTTAGTTGGATGCTTAATGGATTTATTAATGCCACAATGATATTCTTCTTCTGCACAAAAGCAATTGAGCCTCAGGCCTTTGATGAGGAGGGAAGAACAGCCGGAAGGGATATGCTGGGCGTGACAATGTATACCTGCGTGGTTTGGGTGGTGAACTTGCAGATGGCACTTGCTATACGTTATTTCACCTTGATACAACATATTTTTATCTGGGGTTCCATTGCTTTCTGGTATCTTTTCCTCCTGGCATATGGAGCAATGCCTCCAAAATTTTCTACAAATGTTTATCAAGTCTTCATTGAAACTCTCGCCACATCTCCTTCCTTTTGGGCTGTGACATTCTTTGTGGCGATCTCAACACTTATACCATACTTCACATTCTCAGTAATTCAGATGTGGTTCTTCCCCATGTATCACCAAATGGTACAGTGGATAAGGTATGAGAGGAAGACAAATAGCACTGAATAA 1791 0.4115 MSVIVKDEEGRILLLSKGADSVMFERLANNGRTFEEKTMEHVHEYAEAGLRTIILSYRELDEEEYKEFDGKLSEVKSSVSEDRETLIEELLDTIERNLILLGATAVEDKLQNGVPDCIDKLAQAKIKIWVLTGDKMETAINIGFSCRLLRQGMRQIIIHLEIPEIQALEKVGDKMAVVKDCYPPTTVRHILPCFHVQLQVALLICILLKCCLVSRESVHHQLSEGAQLLVASRGTCQQTFSLIIDGKSLTYALEDNMKNMFLELASHCASVICCRSSPKQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADEGIGISGVEGMQAVMSSDIAIAQFKYLERLLLVHGHWCYRRMSSMICYFFFKNITFGFTLFLYEVYASFSGQPAYNDWFLSLYSVFFSSLPVIALGVLDQDVSARYCLKFPILYQEGVQNVLFSWRIVLSWMLNGFINATMIFFFCTKAIEPQAFDEEGRTAGRDMLGVTMYTCVVWVVNLQMALAIRYFTLIQHIFIWGSIAFWYLFLLAYGAMPPKFSTNVYQVFIETLATSPSFWAVTFFVAISTLIPYFTFSVIQMWFFPMYHQMVQWIRYERKTNSTE 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01086 596 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 588 - -
Vimu10g01086 596 SUPERFAMILY HAD-like 41 354 IPR036412 -
Vimu10g01086 596 Pfam Phospholipid-translocating P-type ATPase C-terminal 327 577 IPR032630 -
Vimu10g01086 596 SUPERFAMILY Calcium ATPase, transmembrane domain M 348 577 IPR023298 -
Vimu10g01086 596 NCBIfam HAD-IC family P-type ATPase 271 381 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g01086 596 Gene3D - 1 75 IPR023299 GO:0000166
Vimu10g01086 596 Gene3D - 97 339 IPR023214 -
Vimu10g01086 596 NCBIfam phospholipid-translocating P-type ATPase 1 584 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01086 Vimu-Chr10 10283521 10287319 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01086 1 596 Primary Pumps ATPases AT3G25610 69.463 0.0 869
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01086 K01530 - gmx:100776955 993.416