Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01075 ATGGAGTCTGGTGAGGAGATTAATTTGAATATAGAAAGTGGTGGTGGAAATAATGGGAAGAGTGGTGATGGGTTCATTGATAGAAGTAAGGTGCGGATTTTGTTGTGCGATAACGATTCCAAGAGTTCTCAAGAGGTTTTCACGCTTCTTTTGAGGTGTTCTTATCAGGTGACTTTAGTAAAGTCGCCGAGACAGGTAATTGACGCGCTGAATGCAGAGGGGCAACATATAGATATCATACTGGCTGAACTTGACCTTCCAACAAAGAAGGGCATGAAGATGCTGAAGTACATAGCACGGGATAAAGAGTTTCGTAGAATCCCTGTTATAATGATGTCCGCACAAGATGAGGTATCCGTTGTTGTTAAGTGCTTGAGACTTGGAGCAGCTGACTATCTAGTAAAGCCCTTACGTACTAATGAACTATTAAATTTGTGGACACACATGTGGAGACGGAGGCGCATGCTTGGACTTGTAGAGAAGAACATCTTGAATTATGAGTTTGATCTTGTAGCATCAGATCCCAGTGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGACACAGATGACAAGTCCAAGAGAAGCAACAATCCAGAGGTTGGATTGTCAGTCCAACAAGAGCAAGAGTCTACTATTGCAATTGCGGCTGCTGTTGAGAAACCTCTAGATGCTCATGCATCAGAACACGGGCCTGAAGTCGATGTATTTAATGATCATCGAACAGCACCTTTTTCATCTGGTCCGAAGAAGAGTGAGCTAAGGATAGGGGAGTCATCAGCCTTTTTCACGTATGTCAAAGCATCTATACTGAAGAGTAACTTTGAAGGGGTTGTTAACGTAGACAACCATGGTGCTGCACATGTGAGGATGGAAGTTATGCATCAAGCATGTGCTCAACAAGGGGTTAATGACCTTCAAACACGTGAAAATGGAGAGACCTGTGAAAGTCAATCGCAAGATGACTTACCCAGCAGCAGTAGTATACCTGATTCTCTCTCTATGGAAAGGTCTTGTACTCCACCTGCATCAATGGAAGTTTCCCCCCAAAAGCACAAGGAAGAAAATTTCCATCACGGTGTGATGCATCCAAGAAATGGGACTCATTGTTCTGAGCATGAAGTATCTGGCATGTCTTCCCAACATACTTATCCATATTATATTTCAGGAGTTGTTAATCATGTCATGATGCCTTCATCTGCACAAATGTATCACCAGAAGAATATGCAGGACCTACAGAATCATCCCAGTGCAGCTATGATTGCTCAATACAGTCATCTTCCCCAAGGTGGTCCTCACGGACCAGGGATGACATCTTTCCCATACTACCCAATGAGTATATGCTTACAACCTGGTCAGGTTCCTCAACCCCATTCATGGCCATCATTTGGCAGCTCAAGTTCATCAGAAGCAAAATTAAGTAAAGTTGACAGGAGAGAAGCAGCACTGATGAAGTTCAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTTAACCGGAAACGACTTGCTGAAAGACGGCCTCGGGTGAGGGGACAGTTTGTCAGAAAATTAAATAGTGCCAATGTTGATCTCAATGGCCAGCCTGCATCAATTGACTATGATGAAGATGATGAAGAGGATGAAGATGACCAGGGAGCAAGAGATTCTTCTCCTGAGGATGCTTGA 1683 0.4332 MESGEEINLNIESGGGNNGKSGDGFIDRSKVRILLCDNDSKSSQEVFTLLLRCSYQVTLVKSPRQVIDALNAEGQHIDIILAELDLPTKKGMKMLKYIARDKEFRRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVEKNILNYEFDLVASDPSDANTNSTTLFSDDTDDKSKRSNNPEVGLSVQQEQESTIAIAAAVEKPLDAHASEHGPEVDVFNDHRTAPFSSGPKKSELRIGESSAFFTYVKASILKSNFEGVVNVDNHGAAHVRMEVMHQACAQQGVNDLQTRENGETCESQSQDDLPSSSSIPDSLSMERSCTPPASMEVSPQKHKEENFHHGVMHPRNGTHCSEHEVSGMSSQHTYPYYISGVVNHVMMPSSAQMYHQKNMQDLQNHPSAAMIAQYSHLPQGGPHGPGMTSFPYYPMSICLQPGQVPQPHSWPSFGSSSSSEAKLSKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNSANVDLNGQPASIDYDEDDEEDEDDQGARDSSPEDA 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01075 560 MobiDBLite consensus disorder prediction 457 472 - -
Vimu10g01075 560 MobiDBLite consensus disorder prediction 179 208 - -
Vimu10g01075 560 MobiDBLite consensus disorder prediction 525 560 - -
Vimu10g01075 560 MobiDBLite consensus disorder prediction 536 560 - -
Vimu10g01075 560 Gene3D - 31 238 - -
Vimu10g01075 560 Pfam Response regulator receiver domain 33 144 IPR001789 GO:0000160
Vimu10g01075 560 ProSiteProfiles Response regulatory domain profile. 32 150 IPR001789 GO:0000160
Vimu10g01075 560 SMART REC_2 31 146 IPR001789 GO:0000160
Vimu10g01075 560 MobiDBLite consensus disorder prediction 310 354 - -
Vimu10g01075 560 MobiDBLite consensus disorder prediction 457 476 - -
Vimu10g01075 560 Pfam CCT motif 480 522 IPR010402 GO:0005515
Vimu10g01075 560 ProSiteProfiles CCT domain profile. 480 522 IPR010402 GO:0005515
Vimu10g01075 560 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 321 IPR045279 GO:0009736
Vimu10g01075 560 MobiDBLite consensus disorder prediction 310 346 - -
Vimu10g01075 560 SUPERFAMILY CheY-like 27 157 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01075 Vimu-Chr10 10163671 10168188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01075 20 559 Response Regulator Gene Family AT5G61380 50.478 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vimu10g01075 Response_reg 1.7e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01075 K12127 - gmx:100799728 964.526
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01075 10 10163671 10168188 Vimu10g01075 10 10163671 10168188 ECH