Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01066 ATGGGAAGAACTCCTTGCTGCAGTCACGACCAACTCAGAAAAGGTGCCTGGACTGTTCAAGAAGACCAGAAACTCATTGCTTACATTCAGAAACATGGCACCGGAAGCTGGCGTACCCTTCCTCAGAAAGCTGGTCTTCAGAGATGTGGAAAGAGTTGCAGGCTAAGATGGTTTAACTACCTCAGACCAGACATTAAGAGAGGAAAATTGAGCCCAGAAGAAGAGCAGAAGATTATAAAACTTCAGGCTATTCTTGGCAACAGGTGGTCAAGTATTGCAAAGCATTTACCAATGCGAACTGATAACGAAATAAAAAACTATTGGAACTCGTATCTGAAAAAGCACTATGAAAAGAATGATGTGTATCCATCGAGCTCAAAACCAATTAGCACTGCTAGTTCAACAGAATCAAAATCCAGTGACTTGTGCAAGGTTCCATCAAAAGAAACTGATTGCCATGGACCAAATGCCACTCCACACCAATCTAACCAGACCAACTTACCAAAGACAATGTCATCCTCAACTCAACTTCTCAACAGAGTTGCTAGTAAAATTCTTTCATCTGGGTACCTAGAAGCAATAAAATCATATCAACATGTTGTTGCTGGGAAAAGCAACGGTGATAGTGTGGTTAAAACCGGAATTGGAGTAGAAAAGGAGGGTAACAGAGACCCCCTTGTGCCTAATTTGACATCATCAAATCATTCAGTAACTTGTTCTGCTCAGCTACTGAACAAGATGGCTACTTCACTCCCTCATAAAGTTCACGGCCTTGAATCTGCAAAAGCTGTATTTTCAAAATTACTGGAAAGCAGTGAAAAAGGTGACAGTGGTAGTGATGGTAGTAGCTTTATTAGCAGTGATGAAATTGGAGAGTGTTTGAATGCTCTAAGCCCTTTTGAGGATGGACCGCACATAACGAACGTGGTTGGGTCCCCATCTAGTCCTTCCCTCATATTCAATCAGGTGACCACACCCTCATGCTTTTCAGACAATGACGATAATTGGCAAAACGTTTCATCTAACTACGTTTCATTCAGACAATGTGCTCCAACTGCTGCTGAATGCAGTGTTTCTGAACTCAACTTGGGTGAGTCTTGTAGTTCAACGTCATGTTTCCTCTTTGAAAATACTGATCTCGGAATCTGTGATGATGAAATAAGCAAGTACATTCAGTATTTGTAA 1185 0.4143 MGRTPCCSHDQLRKGAWTVQEDQKLIAYIQKHGTGSWRTLPQKAGLQRCGKSCRLRWFNYLRPDIKRGKLSPEEEQKIIKLQAILGNRWSSIAKHLPMRTDNEIKNYWNSYLKKHYEKNDVYPSSSKPISTASSTESKSSDLCKVPSKETDCHGPNATPHQSNQTNLPKTMSSSTQLLNRVASKILSSGYLEAIKSYQHVVAGKSNGDSVVKTGIGVEKEGNRDPLVPNLTSSNHSVTCSAQLLNKMATSLPHKVHGLESAKAVFSKLLESSEKGDSGSDGSSFISSDEIGECLNALSPFEDGPHITNVVGSPSSPSLIFNQVTTPSCFSDNDDNWQNVSSNYVSFRQCAPTAAECSVSELNLGESCSSTSCFLFENTDLGICDDEISKYIQYL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01066 394 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu10g01066 394 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu10g01066 394 CDD SANT 16 61 IPR001005 -
Vimu10g01066 394 MobiDBLite consensus disorder prediction 154 170 - -
Vimu10g01066 394 MobiDBLite consensus disorder prediction 122 170 - -
Vimu10g01066 394 Gene3D - 69 144 - -
Vimu10g01066 394 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu10g01066 394 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vimu10g01066 394 Gene3D - 14 66 - -
Vimu10g01066 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vimu10g01066 394 SMART sant 66 114 IPR001005 -
Vimu10g01066 394 SMART sant 13 63 IPR001005 -
Vimu10g01066 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vimu10g01066 394 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vimu10g01066 394 FunFam MYB-related transcription factor 13 66 - -
Vimu10g01066 394 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 224 - -
Vimu10g01066 394 FunFam MYB transcription factor 69 140 - -
Vimu10g01066 394 MobiDBLite consensus disorder prediction 123 141 - -
Vimu10g01066 394 CDD SANT 71 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01066 Vimu-Chr10 10070056 10071974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01066 1 128 MYB Transcription Factor Family AT5G15310 68.750 6.01e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu10g01066 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01066 K09422 - gmx:100818639 583.563