Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01065 ATGGAAAACGTTTCAGTTCTGTGTAAGGAAGAGGTTCCGATGGATTTGCCTCCAGGGTTTAGGTTTCATCCAACTGATGAAGAGCTTATTACTCATTACCTTTACAGAAAGGTAACTGAGACAAACTTCTCAGCTAGGGCCATTGGAGAGGTGGACTTGAACAGGTCTGAACCTTGGGATTTGCCATGGAAGGCCAAAATGGGAGAGAAAGAATGGTACTTTTTCTGTGTGAGAGACAGAAAGTATCCAACGGGTTTGAGGACCAACAGGGCCACTGAAGCAGGATACTGGAAGGCCACAGGGAAAGACAAAGAGATCTTCAGAGGGAAATCTCCTGTGGGAATGAAGAAAACTTTGGTTTTCTACAAAGGAAGAGCTCCCAAGGGAGAGAAAACTGATTGGGTCATGCATGAATATAGACTTGAGGGTAAATTCTCTGTCCCCAACCTCCCCAAAACTGCAAAGAACGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGTTCGGGTGGGAAGAAGACTCATATTGATGGGATAATGATGATGGACTCTTACGGAAACGAATTGGGTTCATCTGCTTTGCCACCTCTTACTGATTCCTCACCTTCCATTGGCAACACCAAAGCTTTGAGTGCGTCTGAACAGGTTTACGTGCCCTGCTTCTCCAATCCAATTGATGTTCCAAGAGGGATCTTCGATTCCTTGAGCAACATCAACATCATCAACAACATCAACAACAACGCCCTTTATGGGGTTTCTTCAAACCATTCATTCTACTCCACTCAAGGGTTTCAACTTCAGGCTCCACCAACGCTGCCTTCACCCGGTTCTTCAAACCATTACCTCAGATCCTTCTTTAACAACCATGGAAAAGGATCATTCTTGAGGAATGGATTTGAACAAGAGACGGAAATGGTCAGTGTCTCACAGGAAACAGGTGTTTCTACTGAAGTGAACGCAGAAACCTCTTCAGTTGTGTCAAATCTTGAGATGGGGAATAGGATCTTTGAGAATCAAAACAACCCAATTGGTTCGGCTGCACCAGGGGACCTTGCTAGCTTGTGGAACTACTGA 1071 0.45 MENVSVLCKEEVPMDLPPGFRFHPTDEELITHYLYRKVTETNFSARAIGEVDLNRSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFRGKSPVGMKKTLVFYKGRAPKGEKTDWVMHEYRLEGKFSVPNLPKTAKNEWVICRVFQKSSGGKKTHIDGIMMMDSYGNELGSSALPPLTDSSPSIGNTKALSASEQVYVPCFSNPIDVPRGIFDSLSNINIINNINNNALYGVSSNHSFYSTQGFQLQAPPTLPSPGSSNHYLRSFFNNHGKGSFLRNGFEQETEMVSVSQETGVSTEVNAETSSVVSNLEMGNRIFENQNNPIGSAAPGDLASLWNY 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01065 356 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 259 - -
Vimu10g01065 356 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Vimu10g01065 356 SUPERFAMILY NAC domain 14 166 IPR036093 GO:0003677|GO:0006355
Vimu10g01065 356 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Vimu10g01065 356 FunFam NAC domain-containing protein 100-like 25 170 - -
Vimu10g01065 356 Gene3D NAC domain 25 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01065 Vimu-Chr10 10005571 10007612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01065 14 356 NAC Transcription Factor Family AT5G07680 58.309 1.34e-129 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu10g01065 NAM 2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01065 - - gmx:547650 575.474