Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01059 ATGGTGCTTTTGGGGCTTCTCTTGCTGGGATTCCTTTCTCTGGCTTCACCTCTCTCTTCTGCTTCTGATTATGGTTGGATGAATGCTCATGCAACCTTTTATGGAGGAGGTGATGCCTCTGGCACTATGGGTGGAGCATGCGGGTATGGGAACCTGTACAGCGAGGGTTATGGAACAAACAGTGCTGCTTTGAGCACAGCTTTGTTCAACAATGGTTTAATTTGCGGGGCATGTTTCGAGATTAGGTGTGTTGATGATAAGAATTGGTGTCTTCCACGCTCAGTTGTGGTCACTGCAACCAATTTCTGTCCCCCAAACAATGCCCTCCCAAACACTGCAGGAGGATGGTGCAATCCTCCCCTTCACCATTTCGACCTTTCTCAACCTGTCTTCCTACAAATTGCTCAATACAGAGCTGGAATAGTACCTGTTGCTTACAGAAGGGTCCCTTGCCAAAAGAGAGGGGGCATCAGATTCACCATCAACGGCCACTCATACTTCAACCTAATCCTAATCACAAACGTGGGAGGTGCTGGTGATGTTCGTGGAGTTTCCATCAAAGGTTCAAGAACAAATTGGCAACCTATGACCAGAAACTGGGGTCAAAACTGGCAAAGCAACACTTACCTCAATGGACAAAGCCTCTCTTTTAAGGTTACCACCAGCGAGGGACGCACCGTGGTCTCTTACAATGTTGCACCGTCAAGTTGGTCCTTTGGTCAAACTTTCAACGGCAACCAATTCGTTTAA 750 0.4747 MVLLGLLLLGFLSLASPLSSASDYGWMNAHATFYGGGDASGTMGGACGYGNLYSEGYGTNSAALSTALFNNGLICGACFEIRCVDDKNWCLPRSVVVTATNFCPPNNALPNTAGGWCNPPLHHFDLSQPVFLQIAQYRAGIVPVAYRRVPCQKRGGIRFTINGHSYFNLILITNVGGAGDVRGVSIKGSRTNWQPMTRNWGQNWQSNTYLNGQSLSFKVTTSEGRTVVSYNVAPSSWSFGQTFNGNQFV 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01059 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Vimu10g01059 249 PANTHER EXPANSIN-A15 9 248 IPR002963 GO:0009664
Vimu10g01059 249 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Vimu10g01059 249 SUPERFAMILY PHL pollen allergen 153 244 IPR036749 -
Vimu10g01059 249 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Vimu10g01059 249 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Vimu10g01059 249 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Vimu10g01059 249 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Vimu10g01059 249 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Vimu10g01059 249 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Vimu10g01059 249 FunFam Expansin 156 248 - -
Vimu10g01059 249 Pfam Lytic transglycolase 62 146 IPR009009 -
Vimu10g01059 249 Gene3D - 156 248 IPR036749 -
Vimu10g01059 249 Gene3D - 13 152 IPR036908 -
Vimu10g01059 249 FunFam Expansin 17 152 - -
Vimu10g01059 249 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Vimu10g01059 249 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Vimu10g01059 249 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Vimu10g01059 249 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Vimu10g01059 249 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Vimu10g01059 249 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Vimu10g01059 249 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Vimu10g01059 249 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Vimu10g01059 249 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Vimu10g01059 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Vimu10g01059 249 SMART dpbb_1 61 146 IPR007112 -
Vimu10g01059 249 CDD DPBB_EXPA_N 25 151 - -
Vimu10g01059 249 SUPERFAMILY Barwin-like endoglucanases 11 174 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01059 Vimu-Chr10 9904015 9906676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01059 1 248 Expansin Gene Family AT2G03090 76.613 6.36e-145 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01059 - K20628 gmx:100799075 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02359 11 41119320 41122279 Vimu10g01059 10 9904015 9906676 ECH
Vimu10g01059 10 9904015 9906676 Vimu10g01059 10 9904015 9906676 ECH