Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01052 ATGGAGAATCAGCAACTCACGTTTTGGAATTCTAATTATCAAATTGATGAAAACTCATTTGCACCAACTTGCCAATTTTCTTCGTATGATTATTTCAGCATCTTTAATTTCTGCAGAGGTAATGCCAGTGATGGGTTTCATTGGCCCTATGAATTTCCTCTGCAAGATAGCTATTTTGATGTGGTCCCATTCATGAAGTGTTATTATCCCCATGACATTTTATACGAAATTTTGCCGCTTGAACCAACCCCACTAACTTTTCAAGGTTACTATGACTTCAGTGATGTTAAAAACGTGCTTTCTGCTTGGAACGAAGTTGACGTTTCAGACCATAAACCTGCGTTTTCATCGAGCAACGATGGTGGAAGTGTGAATGAGATGGAAGAAGTGAAGGGTAAACAACCCAGAGAAGAGAGAATTAGTAGCAGTGCGAAAATTCTATCAAGGAAAACCGTTTCTCAGTACTTCTACATGCCTATATCACAGGCTGCTAAAGAGCTTAACGTTGGTCTCACACACTTGAAGAAAAGGTGCAGAGAATTAGGTATTCAAAGGTGGCCACATAGGAAGCTAATGAGTCTGCAAACCCTTATTAAGAACATGCAAGAGCAAGTAGAGTCTGAGGGACCAGAAAATGATGAAAAAATAAGGACTGCCATTGAAATGTTGGAGAAAGAAAAGAGCATGGTGGAGCAAAAACCAGATTTGGAACTGGAAGATAAAACAAGAAGGCTTAGACAAGCTTGTTTCAAGGCTAACTACAAGAAGAGGAAACTCATGACCATGACTTTCATGGAATCCAATCTTCCCTTGATGCCCTATTCCACAAGTATTGACAAAGGGGACGAATAA 852 0.3967 MENQQLTFWNSNYQIDENSFAPTCQFSSYDYFSIFNFCRGNASDGFHWPYEFPLQDSYFDVVPFMKCYYPHDILYEILPLEPTPLTFQGYYDFSDVKNVLSAWNEVDVSDHKPAFSSSNDGGSVNEMEEVKGKQPREERISSSAKILSRKTVSQYFYMPISQAAKELNVGLTHLKKRCRELGIQRWPHRKLMSLQTLIKNMQEQVESEGPENDEKIRTAIEMLEKEKSMVEQKPDLELEDKTRRLRQACFKANYKKRKLMTMTFMESNLPLMPYSTSIDKGDE 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01052 283 Pfam RWP-RK domain 147 194 IPR003035 -
Vimu10g01052 283 ProSiteProfiles RWP-RK domain profile. 130 215 IPR003035 -
Vimu10g01052 283 MobiDBLite consensus disorder prediction 114 139 - -
Vimu10g01052 283 PANTHER PROTEIN RKD4 84 261 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01052 Vimu-Chr10 9807364 9808555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01052 52 263 AtRKD Transcription Factor Family AT1G18790 45.794 1.34e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vimu10g01052 RWP-RK 4.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01052 - - gmx:100782238 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01052 10 9807364 9808555 Vimu10g01052 10 9807364 9808555 ECH
Vimu7g00797 7 7936950 7938109 Vimu10g01052 10 9807364 9808555 PCT