Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu10g01052 | ATGGAGAATCAGCAACTCACGTTTTGGAATTCTAATTATCAAATTGATGAAAACTCATTTGCACCAACTTGCCAATTTTCTTCGTATGATTATTTCAGCATCTTTAATTTCTGCAGAGGTAATGCCAGTGATGGGTTTCATTGGCCCTATGAATTTCCTCTGCAAGATAGCTATTTTGATGTGGTCCCATTCATGAAGTGTTATTATCCCCATGACATTTTATACGAAATTTTGCCGCTTGAACCAACCCCACTAACTTTTCAAGGTTACTATGACTTCAGTGATGTTAAAAACGTGCTTTCTGCTTGGAACGAAGTTGACGTTTCAGACCATAAACCTGCGTTTTCATCGAGCAACGATGGTGGAAGTGTGAATGAGATGGAAGAAGTGAAGGGTAAACAACCCAGAGAAGAGAGAATTAGTAGCAGTGCGAAAATTCTATCAAGGAAAACCGTTTCTCAGTACTTCTACATGCCTATATCACAGGCTGCTAAAGAGCTTAACGTTGGTCTCACACACTTGAAGAAAAGGTGCAGAGAATTAGGTATTCAAAGGTGGCCACATAGGAAGCTAATGAGTCTGCAAACCCTTATTAAGAACATGCAAGAGCAAGTAGAGTCTGAGGGACCAGAAAATGATGAAAAAATAAGGACTGCCATTGAAATGTTGGAGAAAGAAAAGAGCATGGTGGAGCAAAAACCAGATTTGGAACTGGAAGATAAAACAAGAAGGCTTAGACAAGCTTGTTTCAAGGCTAACTACAAGAAGAGGAAACTCATGACCATGACTTTCATGGAATCCAATCTTCCCTTGATGCCCTATTCCACAAGTATTGACAAAGGGGACGAATAA | 852 | 0.3967 | MENQQLTFWNSNYQIDENSFAPTCQFSSYDYFSIFNFCRGNASDGFHWPYEFPLQDSYFDVVPFMKCYYPHDILYEILPLEPTPLTFQGYYDFSDVKNVLSAWNEVDVSDHKPAFSSSNDGGSVNEMEEVKGKQPREERISSSAKILSRKTVSQYFYMPISQAAKELNVGLTHLKKRCRELGIQRWPHRKLMSLQTLIKNMQEQVESEGPENDEKIRTAIEMLEKEKSMVEQKPDLELEDKTRRLRQACFKANYKKRKLMTMTFMESNLPLMPYSTSIDKGDE | 283 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu10g01052 | 283 | Pfam | RWP-RK domain | 147 | 194 | IPR003035 | - | |
Vimu10g01052 | 283 | ProSiteProfiles | RWP-RK domain profile. | 130 | 215 | IPR003035 | - | |
Vimu10g01052 | 283 | MobiDBLite | consensus disorder prediction | 114 | 139 | - | - | |
Vimu10g01052 | 283 | PANTHER | PROTEIN RKD4 | 84 | 261 | IPR044607 | GO:0003700 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu10g01052 | Vimu-Chr10 | 9807364 | 9808555 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu10g01052 | 52 | 263 | AtRKD Transcription Factor Family | AT1G18790 | 45.794 | 1.34e-54 | 176 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | RWP-RK | Vimu10g01052 | RWP-RK | 4.6e-21 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu10g01052 | - | - | gmx:100782238 | 411.764 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu10g01052 | 10 | 9807364 | 9808555 | Vimu10g01052 | 10 | 9807364 | 9808555 | ECH | |
Vimu7g00797 | 7 | 7936950 | 7938109 | Vimu10g01052 | 10 | 9807364 | 9808555 | PCT |