Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01046 ATGCCACCTTCCAGTTCGACCCGTGTTGGTGCTGCGTCTTCTGCATACAGAGGAGTCCGCAAGAGAAAATGGGGCAAGTGGGTCTCCGAAATCCGCGAGCCGGGAACCAAGACCCGAATTTGGCTCGGAAGTTTCGAGACGCCGGAGATGGCCGCCGCCGCCTACGACGTGGCGGCGTTGCATTTCCGCGGCCGCGACGCCAGGCTCAACTTCCCCGAGCTCGCAAGCACGCTGCCACGCCCCGTCAGCAACAATGCCGACCACATACGCATGGCAGCGCACGAGGCGGCCCTGAGGCTCCGCACCAACCCCGCCCCGCCGGAGACTGAGATAGGAGGCGGTTCCTCGACGGCGTCGCCGCTGACGGTGAGACTCTCCCCCACTCAGATTCAGGCCATCAATGACTGCCCCATGGACTCCCCTCAGACGTGGATGCAAATGCCGGACACTTTCATGATGCACGATCAGTCCATGATTTTCGCAAATGGTTATGCCTTTGAAGACAACGAGTGGGAGGATATGCAGAATGATTCTCTCTGGGATCCTTAG 549 0.6029 MPPSSSTRVGAASSAYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDVAALHFRGRDARLNFPELASTLPRPVSNNADHIRMAAHEAALRLRTNPAPPETEIGGGSSTASPLTVRLSPTQIQAINDCPMDSPQTWMQMPDTFMMHDQSMIFANGYAFEDNEWEDMQNDSLWDP 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01046 182 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
Vimu10g01046 182 FunFam Ethylene-responsive transcription factor 2 14 73 - -
Vimu10g01046 182 Pfam AP2 domain 15 64 IPR001471 GO:0003700|GO:0006355
Vimu10g01046 182 Gene3D AP2/ERF domain 15 73 IPR036955 GO:0003700|GO:0006355
Vimu10g01046 182 CDD AP2 14 74 IPR001471 GO:0003700|GO:0006355
Vimu10g01046 182 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700|GO:0006355
Vimu10g01046 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 158 - -
Vimu10g01046 182 SUPERFAMILY DNA-binding domain 14 73 IPR016177 GO:0003677
Vimu10g01046 182 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Vimu10g01046 182 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01046 Vimu-Chr10 9743908 9744456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01046 14 182 AP2-EREBP Transcription Factor Family AT1G71450 61.628 2.13e-65 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu10g01046 AP2 3.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01046 - - gmx:100815719 340.502