Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01042 ATGATTCTTGACATTGAAGGAACTGATACAACTGAATCATCTGAATATGATAGTGAAGATGAATATGGTAATGGCTTTATTGTTGACAGTGATGTTGATATTTACCAGTCTTCACCAGTTCCAAATAGTGGAGTTGTAATTGAAGAAATAGTGGATGATGAAAAACCTGAATCTGGAGATGATCAAAATAAACAATTAAAGAAAAAGAAACAGGTAGCTAAGTTGAAACCAAAAGACAGCAAAATTTTCAAGTCTGAAATTGTTGCCAAGGGTGAGACTGACCTTGTGGAGAATGAAGATGAAGATGAAGATGGTTTTCCAATTTCCACTGCTGAGAAAGATGTCTCTATCTCTCAGAAGGAAGATGGAGAAACAAAAGGAGAACAAGCACTTAAGAAAATTGAGAATGCCAACAAGAAGAGAAAAGATGTCGATGATTTTGCTGGAGTTAAACGGAAGGTTGACAGTGCTGATGAAGATGAGCCACAGGATGGGAAAAAAAAGAAAAGAAATAAGTTAAAGGAACGTATTAAAGAGGAAAATGCTGATGCATCTGGCAATAGCAATGAGACAAATGTTATTGCCCCAGATGAAAAGCATCCAGAGGCTGTCAAAACTACAACTGGCCAGAGTGGTGTTTCTCATGCAAAGGATGAAAATGAGGGAAAATTGTCCAATAACGAGGTCGGTGCTGAGAAAAAAAACAAGAACAAGAAGAAGAAAAAGACCAAGGAGTTAGAAGGGATAGCAGCTGCAGATCAAATTACTTCAAGTGCTGAAAAGCAGAATTTGTCTGTTGCCTCGGAGAAAAAAGGGAAGAAACAAACTGAGACCAAGCCATCTCAAAGGAGCTCCTTATGGGCAAACCTGATGGCAAAAGAGCTGCTCCTGGAAAAAAGGTTACACATCACCTACCGATTTTTTGATGGTTGCATTGGCATGGTCAGTGTTAAATATATTGGCAAGCTGCAAAAGGATGGGAAAATATTTGACTCAAATGTGGGAAGAGCACCCTTTAAATTTCGCCTGGGTGTAGGACAAGTCATCAAAGGGTGGGAGGTTGGGATCAATGGGATGAGGATAGGGGACAAAAGAAGGATCACAATTCCACCATCTATGGGATACGCAGATAAGGGCGTTGGTACTATACCACCAAATGCGTGGCTTGTATTTGATGTTGAGTTGGTTGATGTTGATCGCTAA 1203 0.3965 MILDIEGTDTTESSEYDSEDEYGNGFIVDSDVDIYQSSPVPNSGVVIEEIVDDEKPESGDDQNKQLKKKKQVAKLKPKDSKIFKSEIVAKGETDLVENEDEDEDGFPISTAEKDVSISQKEDGETKGEQALKKIENANKKRKDVDDFAGVKRKVDSADEDEPQDGKKKKRNKLKERIKEENADASGNSNETNVIAPDEKHPEAVKTTTGQSGVSHAKDENEGKLSNNEVGAEKKNKNKKKKKTKELEGIAAADQITSSAEKQNLSVASEKKGKKQTETKPSQRSSLWANLMAKELLLEKRLHITYRFFDGCIGMVSVKYIGKLQKDGKIFDSNVGRAPFKFRLGVGQVIKGWEVGINGMRIGDKRRITIPPSMGYADKGVGTIPPNAWLVFDVELVDVDR 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01042 400 Gene3D - 252 400 IPR046357 GO:0003755
Vimu10g01042 400 MobiDBLite consensus disorder prediction 50 72 - -
Vimu10g01042 400 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 314 396 IPR001179 GO:0003755
Vimu10g01042 400 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 169 399 - -
Vimu10g01042 400 MobiDBLite consensus disorder prediction 216 234 - -
Vimu10g01042 400 MobiDBLite consensus disorder prediction 260 283 - -
Vimu10g01042 400 Coils Coil 163 183 - -
Vimu10g01042 400 SUPERFAMILY FKBP-like 300 398 - -
Vimu10g01042 400 MobiDBLite consensus disorder prediction 50 68 - -
Vimu10g01042 400 FunFam Peptidyl-prolyl cis-trans isomerase 311 400 - -
Vimu10g01042 400 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 312 399 IPR001179 GO:0003755
Vimu10g01042 400 MobiDBLite consensus disorder prediction 115 183 - -
Vimu10g01042 400 MobiDBLite consensus disorder prediction 88 247 - -
Vimu10g01042 400 MobiDBLite consensus disorder prediction 1 25 - -
Vimu10g01042 400 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01042 Vimu-Chr10 9725848 9729174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01042 315 396 Calmodulin-binding Proteins AT5G48570 53.571 3.38e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01042 K14826 - gmx:100792856 497.278