Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01034 ATGGGAAGACCACCTTGCTGTGACAAAATTGGGATTAAGAAAGGCCCATGGACTCCTGAGGAAGACATCATCTTGGTCTCTTACATTCAAGAACATGGACCCGGGAATTGGAGATTGGTTCCCTCTAATACAGGGTTGATGAGATGCAGCAAAAGCTGCCGACTCAGATGGACCAACTATCTCCGACCTGGAATTAAACGAGGCAATTTCACCGATCATGAAGAGAAAATGATAATCCATCTCCAAGCTCTTTTGGGTAACAGGTACTGCTTGTTTGATAGTTTAAAGGTTGGGTTTTTGTCTGCCATGAATGGAAAAGCCTCCTATCTTCCACAGAGGACAGACAATGACATAAAGAACTATTGGAATACCCATTTGAAAAAGAAGCTGAAGAAGATGCAGAGTGAGGAAGGTGACGATGAAGGTAACAATTATGACAAGGGAAACTCTTGTTCACAGCCAAAGGGTCAGTGGGAGAGAAGACTTCAAACAGACATCCACATGGCCAAACAAGCCTTATGTGAGGCTTTGTCCCTTGACAAACCAAACCAAATCTTCCCCGAGACCAAACTACCTTCGACTTCTTCCCACCCCACATCATCCTTGTACGCCTCAAGCACAGAAAACATAGCCAGGTTGCTGGACAATTGGATGAAAAAATCCCCAAAGAAAACCGAAACAAACTACTCCATGAGCAACATGGTAACCACAGGGTCTAGTTCGAGTGAGGGAACACAAAGCACACAGGACCAGCTTGACTCCTTGTGGAGCTTCCAGTATGAACGTTCACAGTCTGTGTCAGCAGAAGAGAACACGAACTTGGTGGAGAGCAAGCCAAACGTAGAGACGCAAGTGCCTCTGATGCTGCTGGAGAATTGGCTTTTCGAGGATGGTGCACCTCAGTGCAACGAAGATCTCATGAACATGTCACTGGAGGAAACTACAGATGGGTTGTTCTAG 960 0.4573 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRLVPSNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRYCLFDSLKVGFLSAMNGKASYLPQRTDNDIKNYWNTHLKKKLKKMQSEEGDDEGNNYDKGNSCSQPKGQWERRLQTDIHMAKQALCEALSLDKPNQIFPETKLPSTSSHPTSSLYASSTENIARLLDNWMKKSPKKTETNYSMSNMVTTGSSSSEGTQSTQDQLDSLWSFQYERSQSVSAEENTNLVESKPNVETQVPLMLLENWLFEDGAPQCNEDLMNMSLEETTDGLF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01034 319 SUPERFAMILY Homeodomain-like 11 122 IPR009057 -
Vimu10g01034 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 251 - -
Vimu10g01034 319 CDD SANT 16 61 IPR001005 -
Vimu10g01034 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 130 IPR017930 -
Vimu10g01034 319 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu10g01034 319 Gene3D - 13 66 - -
Vimu10g01034 319 ProSiteProfiles Myb-like domain profile. 62 126 IPR001005 -
Vimu10g01034 319 FunFam MYB-related transcription factor 13 66 - -
Vimu10g01034 319 SMART sant 66 128 IPR001005 -
Vimu10g01034 319 SMART sant 13 63 IPR001005 -
Vimu10g01034 319 MobiDBLite consensus disorder prediction 132 158 - -
Vimu10g01034 319 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu10g01034 319 Gene3D - 69 150 - -
Vimu10g01034 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01034 Vimu-Chr10 9556752 9557968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01034 1 319 MYB Transcription Factor Family AT5G62470 47.258 5.55e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu10g01034 Myb_DNA-binding 7.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01034 K09422 - gmx:100807020 476.478