Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01026 ATGGACGGAGGTGATGATTTCCACCACCACCATCACCACCACCAACAACATCAACACCGACAAAACTTCCCATTCCAACTCCTCGAGAAGAAAGAAGACCAAGACCCCTCTTCCTGCTCCACTTCCTCCCCATACCCTTCCCTAGCCATCTCGGCCGAACCCTCCACCTCCAACTCAACCCGATCCAACACCACCACACCTTCTCAAGCCTCCCCCAAAAAGCCACCACCCAAAAGAACCTCCACCAAAGACCGCCACACCAAAGTCGACGGCCGCGGTCGTCGAATTCGAATGCCTGCTCTCTGCGCCGCCAGAGTTTTCCAGCTCACGCGGGAGCTCGGACACAAGTCCGACGGCGAGACCATAGAGTGGCTCCTCCAGCAGGCCGAGCCTGCCGTTATCGCCGCCACTGGCACCGGCACCATCCCTGCTAACTTCACTTCCCTTAACATATCTCACCGGAGCTCGGGCTCCTCCATGTCCGTCCCCTCCCAGCTGCGATCCAACTACTTCAATTCAAACTTTTCTCTCCAACCCAGGAGAAGCCTATTCCTTGAAAACACCAATACTTCCACGACGCTCCTCAATTTTCAATCCAACAACCCCATCTCCACTTCCATTTTCCAACCCAAGCACGAATTGCGCGACTCCTCGTCCCTGGACCTGTCCTCGGAGAACAACGAAGAGGGTTTGGGAAGGAAAAGACGACCCTTGGAGCAAGACCTATCCTCGACCATGCAACACCAAGTGGGAAGCTATTTGATGCAATCAAGCTCCTCGGGGACAATTCCGGCCAGCCATGCTCAAATTCCGGCGAATATATGGATGGTGGCGAATTCCAATAGTCAAGGTGTGAGTGGTGAAGCTCCTCTCTGGACGTTCCCCGGTGTGAGTAACAGTGCCTTGTATAGAGGAAACATGTCAAGTGGGTTGCATTTCATGAACTTTCCCACCCCGATGGCCCTTTTACCAGGTCAACAATTAGGGTCTTCTGGGATTGGTGGGAACATGAACGAAGGGCATTTGAGCATGCTTTCGGGGCTAAACCCTTACCGGACGGTGATCGGCGTTTCGGAATCTCAGGCGAGTGAGTCACAGTCACATCACGGTGGAAGCGAGGATCGGCATGATGATAACTAA 1140 0.5386 MDGGDDFHHHHHHHQQHQHRQNFPFQLLEKKEDQDPSSCSTSSPYPSLAISAEPSTSNSTRSNTTTPSQASPKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISHRSSGSSMSVPSQLRSNYFNSNFSLQPRRSLFLENTNTSTTLLNFQSNNPISTSIFQPKHELRDSSSLDLSSENNEEGLGRKRRPLEQDLSSTMQHQVGSYLMQSSSSGTIPASHAQIPANIWMVANSNSQGVSGEAPLWTFPGVSNSALYRGNMSSGLHFMNFPTPMALLPGQQLGSSGIGGNMNEGHLSMLSGLNPYRTVIGVSESQASESQSHHGGSEDRHDDN 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01026 379 MobiDBLite consensus disorder prediction 359 379 - -
Vimu10g01026 379 MobiDBLite consensus disorder prediction 1 95 - -
Vimu10g01026 379 MobiDBLite consensus disorder prediction 214 246 - -
Vimu10g01026 379 MobiDBLite consensus disorder prediction 37 69 - -
Vimu10g01026 379 Pfam TCP family transcription factor 80 237 IPR017887 -
Vimu10g01026 379 ProSiteProfiles TCP domain profile. 82 136 IPR017887 -
Vimu10g01026 379 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 11 369 IPR005333 GO:0003700
Vimu10g01026 379 MobiDBLite consensus disorder prediction 227 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01026 Vimu-Chr10 9474694 9476186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01026 70 327 TCP Transcription Factor Family AT3G47620 49.387 1.60e-63 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vimu10g01026 TCP 2.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01026 - - gmx:100809154 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03886 7 36203702 36204964 Vimu10g01026 10 9474694 9476186 ECH
Vimu10g01026 10 9474694 9476186 Vimu10g01026 10 9474694 9476186 ECH